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fix: less specific module versions
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just need snakemake v7, which also loads python
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kelly-sovacool committed Oct 9, 2024
1 parent 63cf00a commit 1776866
Showing 1 changed file with 1 addition and 5 deletions.
6 changes: 1 addition & 5 deletions carlisle
Original file line number Diff line number Diff line change
Expand Up @@ -9,8 +9,7 @@
#
# DISCLAIMER: This wrapper only works on BIOWULF

PYTHON_VERSION="python/3.9"
SNAKEMAKE_VERSION="snakemake/7.19.1"
SNAKEMAKE_VERSION="snakemake/7"
SINGULARITY_VERSION="singularity"

set -eo pipefail
Expand Down Expand Up @@ -156,7 +155,6 @@ function rescript(){
function runcheck(){
# Check "job-essential" files and load required modules
check_essential_files
module load $PYTHON_VERSION
module load $SNAKEMAKE_VERSION
}

Expand Down Expand Up @@ -211,7 +209,6 @@ function runlocal() {
}

function runtest() {
module load $PYTHON_VERSION
module load $SNAKEMAKE_VERSION
module load $SINGULARITY_VERSION
check_essential_files
Expand Down Expand Up @@ -301,7 +298,6 @@ function run() {
#SBATCH --time=96:00:00
#SBATCH --cpus-per-task=2
module load $PYTHON_VERSION
module load $SNAKEMAKE_VERSION
module load $SINGULARITY_VERSION
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