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Fixed bugs related to library normalization with no_dedup, replicate formatting, and DESeq #127

Merged
merged 8 commits into from
Apr 18, 2024
Merged

Fixed bugs related to library normalization with no_dedup, replicate formatting, and DESeq #127

merged 8 commits into from
Apr 18, 2024

Commits on Apr 10, 2024

  1. Removed check for DESeq2 single-sample group - does not work properly

    epehrsson committed Apr 10, 2024
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  2. Fix bug in library normalization with no_dedup option

    epehrsson committed Apr 10, 2024
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  3. Fix bug in sample table replicate processing

    epehrsson committed Apr 10, 2024
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  4. Allow local library installation

    epehrsson committed Apr 10, 2024
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  5. Fix bug reading FDR threshold instead of log2FC threshold

    epehrsson committed Apr 10, 2024
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  6. Added DESeq2 resources

    epehrsson committed Apr 10, 2024
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  7. Fixed typo in rule DESeq

    epehrsson committed Apr 10, 2024
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Commits on Apr 15, 2024

  1. Updated changelog and docs; reverted R package installation

    epehrsson committed Apr 15, 2024
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