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@kelly-sovacool
kelly-sovacool committed Dec 30, 2024
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26 changes: 17 additions & 9 deletions CHANGELOG.html
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<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="site_libs/quarto-html/anchor.min.js"></script>
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
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<script src="site_libs/bootstrap/bootstrap.min.js"></script>
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<link href="site_libs/bootstrap/bootstrap-6c40ed3430fa5f31e6fbc0b8598a3ef8.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="site_libs/bootstrap/bootstrap-dark-1de5c4262cdefdb2b0852314e1a3ccc6.min.css" rel="prefetch" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
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<link href="site_libs/bootstrap/bootstrap-dark-7b12a1bae88c612ba6c33107dff2fe55.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<script id="quarto-search-options" type="application/json">{
"location": "navbar",
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Expand Down Expand Up @@ -274,17 +274,25 @@ <h2 id="toc-title">On this page</h2>
<section id="tools-development-version" class="level2">
<h2 class="anchored" data-anchor-id="tools-development-version">Tools development version</h2>
<ul>
<li>new command <code>ccbr_tools send-email</code> for sending emails from the command line. (#26, <span class="citation" data-cites="kelly-sovacool">@kelly-sovacool</span>)
<li>new commands:
<ul>
<li><code>ccbr_tools send-email</code> for sending emails from the command line. (#26, <span class="citation" data-cites="kelly-sovacool">@kelly-sovacool</span>)
<ul>
<li>With new helper function: <code>send_email.send_email_msg()</code>.</li>
<li>Works when run from biowulf.</li>
</ul></li>
<li><code>ccbr_tools quarto-add</code> to add quarto extensions from this package. (#30, <span class="citation" data-cites="kelly-sovacool">@kelly-sovacool</span>)
<ul>
<li>Includes new format <code>fnl</code> for our documentation websites.</li>
</ul></li>
</ul></li>
<li>new functions for creating a contributors page for documentation websites: <code>github.print_contributor_images()</code>. (#27, <span class="citation" data-cites="kelly-sovacool">@kelly-sovacool</span>)</li>
<li>new script from <a href="https://github.com/CCBR/TaskManagement/tree/103c73d41858d400fba95ed2130d7d5653f243e0/scripts"><code>CCBR/TaskManagement</code></a>: <code>github_milestones.sh</code>. (#29, <span class="citation" data-cites="kelly-sovacool">@kelly-sovacool</span>)</li>
<li>documentation improvements:
<ul>
<li>fix docstrings rendering – use Google style. (#25, <span class="citation" data-cites="kelly-sovacool">@kelly-sovacool</span>)</li>
<li>overhaul navigation structure of docs website. (#28, <span class="citation" data-cites="kelly-sovacool">@kelly-sovacool</span>)</li>
<li>style the website to follow FNL branding guidelines. (#30, <span class="citation" data-cites="kelly-sovacool">@kelly-sovacool</span>)</li>
</ul></li>
</ul>
</section>
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// Dark / light mode switch
window.quartoToggleColorScheme = () => {
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<footer class="footer">
<div class="nav-footer">
<div class="nav-footer-left">
<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
<p><a href="https://frederick.cancer.gov/research/science-areas/bioinformatics-and-computational-science/advanced-biomedical-computational-science"><img src="site_libs/quarto-contrib/quarto-project/fnl/fnl-logo-dark.png" height="70"></a></p>
</div>
<div class="nav-footer-center">
&nbsp;
<div class="toc-actions d-sm-block d-md-none"><ul><li><a href="https://github.com/CCBR/Tools/edit/main/CHANGELOG.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/Tools/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
<div class="toc-actions d-sm-block d-md-none"><ul><li><a href="https://github.com/CCBR/Tools/edit/main/CHANGELOG.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/Tools/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
<div class="nav-footer-right">
&nbsp;
</div>
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16 changes: 8 additions & 8 deletions CONTRIBUTING.html
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<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="site_libs/quarto-html/anchor.min.js"></script>
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
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<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
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let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
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<footer class="footer">
<div class="nav-footer">
<div class="nav-footer-left">
<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
<p><a href="https://frederick.cancer.gov/research/science-areas/bioinformatics-and-computational-science/advanced-biomedical-computational-science"><img src="site_libs/quarto-contrib/quarto-project/fnl/fnl-logo-dark.png" height="70"></a></p>
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&nbsp;
<div class="toc-actions d-sm-block d-md-none"><ul><li><a href="https://github.com/CCBR/Tools/edit/main/CONTRIBUTING.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/Tools/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
<div class="toc-actions d-sm-block d-md-none"><ul><li><a href="https://github.com/CCBR/Tools/edit/main/CONTRIBUTING.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/Tools/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
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16 changes: 8 additions & 8 deletions LICENSE.html
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<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="site_libs/quarto-html/anchor.min.js"></script>
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
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<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
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const darkModeDefault = false;
const darkModeDefault = true;
let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
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<footer class="footer">
<div class="nav-footer">
<div class="nav-footer-left">
<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
<p><a href="https://frederick.cancer.gov/research/science-areas/bioinformatics-and-computational-science/advanced-biomedical-computational-science"><img src="site_libs/quarto-contrib/quarto-project/fnl/fnl-logo-dark.png" height="70"></a></p>
</div>
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&nbsp;
<div class="toc-actions"><ul><li><a href="https://github.com/CCBR/Tools/edit/main/LICENSE.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/Tools/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
<div class="toc-actions"><ul><li><a href="https://github.com/CCBR/Tools/edit/main/LICENSE.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/Tools/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
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16 changes: 8 additions & 8 deletions badges.html
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<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="site_libs/quarto-html/anchor.min.js"></script>
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
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<link href="site_libs/bootstrap/bootstrap-6c40ed3430fa5f31e6fbc0b8598a3ef8.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
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<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
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return localAlternateSentinel;
}
}
const darkModeDefault = false;
const darkModeDefault = true;
let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
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<footer class="footer">
<div class="nav-footer">
<div class="nav-footer-left">
<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
<p><a href="https://frederick.cancer.gov/research/science-areas/bioinformatics-and-computational-science/advanced-biomedical-computational-science"><img src="site_libs/quarto-contrib/quarto-project/fnl/fnl-logo-dark.png" height="70"></a></p>
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<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
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