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47 Open 67 Closed
47 Open 67 Closed
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Issues list

Calculate scaling factor loads control array for every bam enhancement
#189 opened Mar 4, 2025 by jcha40
add generic and track comment support for BED files bug
#188 opened Feb 14, 2025 by owlang
10 tasks
1
catch Sort BED case of non-unique BED ids bug
#186 opened Nov 26, 2024 by owlang
Unexpected file outputs by sort-bed in GUI bug
#185 opened Nov 20, 2024 by jcha40
Format code and set-up linter streamline
#183 opened Nov 19, 2024 by owlang
AWTError when running graphics tools on headless remote server bug
#182 opened Nov 19, 2024 by owlang
ExpandGFFCLI expands by border when center selected bug easy Simple fixes for beginners to implement
#180 opened Nov 13, 2024 by owlang
TagPileup low memory mode enhancement tagpileup-related
#177 opened Oct 15, 2024 by owlang
FRiX score denominator much lower than total read count bug
#176 opened Oct 9, 2024 by jcha40
Test ScriptManager using X11 forwarding
#175 opened Sep 26, 2024 by owlang
1
Filter BAM by BED New Tool
#174 opened Sep 5, 2024 by owlang
12 tasks
Aggregate Data Row/Column index specification easy Simple fixes for beginners to implement
#154 opened Mar 12, 2024 by WilliamKMLai
1
@Ella-Yang27
update DNAShape tool with new shapes DB
#152 opened Dec 6, 2023 by owlang
@benjaminbeer256
Add @PG tag to BAM header in Filter PIP-seq tool
#144 opened Sep 4, 2023 by owlang
Write an Anaconda recipe for bioconda
#141 opened Aug 24, 2023 by owlang
@owlang
Calculate scaling factor by regions (NFR normalization) New Tool
#139 opened Aug 9, 2023 by owlang
12 tasks
Filter BED/GFF by limits on chrom ends New Tool
#135 opened Jul 21, 2023 by owlang
Add FASTA Chr Name Converter New Tool
#131 opened Jun 21, 2023 by owlang
@Ella-Yang27
1
Add more picard options to MarkDuplicatesWrapper easy Simple fixes for beginners to implement feature-request
#128 opened Jun 9, 2023 by owlang
Add support for separate composite output files in TagPileup streamline tagpileup-related
#125 opened Jun 8, 2023 by owlang
Write Galaxy wrappers for ChIP-exo Tutorial
#124 opened Jun 7, 2023 by owlang
5 of 6 tasks
@cleson28
Wrap priority Picard tools into GUI
#122 opened Jun 6, 2023 by owlang
1
@benjaminbeer256
Gradle Shadow minimize() bug
#116 opened Apr 7, 2023 by owlang
JUnit tests for CI development of all tools
#114 opened Apr 6, 2023 by owlang
6 tasks
TagPileup Blacklist function not working bug tagpileup-related
#106 opened Dec 8, 2022 by owlang
1
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