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@CERC-Genomic-Medicine

CERC Genomic Medicine

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  1. vep_pipeline vep_pipeline Public

    Pipeline for variant annotation using Variant Effect Predictor (VEP)

    Jupyter Notebook 5 2

  2. scripts scripts Public

    Various scripts

    Python 4 2

  3. skills_test_2 skills_test_2 Public

    4 1

  4. glimpse_pipeline glimpse_pipeline Public

    Pipeline for variant imputation in low depth sequencing data using GLIMPSE

    Nextflow 3 1

  5. WEGS_pipelines WEGS_pipelines Public

    Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.

    Nextflow 3

  6. skills_test_3 skills_test_3 Public

    3 2

Repositories

Showing 10 of 25 repositories
  • AccessibilityMask Public
    CERC-Genomic-Medicine/AccessibilityMask’s past year of commit activity
    Python 0 1 0 0 Updated Dec 9, 2024
  • Regenie_nextflow Public

    Pipeline implementation of Regenie

    CERC-Genomic-Medicine/Regenie_nextflow’s past year of commit activity
    Nextflow 3 1 0 0 Updated Nov 11, 2024
  • CARTaGENE_flagship_paper Public
    CERC-Genomic-Medicine/CARTaGENE_flagship_paper’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Sep 23, 2024
  • glimpse_pipeline Public

    Pipeline for variant imputation in low depth sequencing data using GLIMPSE

    CERC-Genomic-Medicine/glimpse_pipeline’s past year of commit activity
    Nextflow 3 MIT 1 1 0 Updated Aug 28, 2024
  • scripts Public

    Various scripts

    CERC-Genomic-Medicine/scripts’s past year of commit activity
    Python 4 2 0 0 Updated Aug 20, 2024
  • WEGS_pipelines Public

    Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.

    CERC-Genomic-Medicine/WEGS_pipelines’s past year of commit activity
    Nextflow 3 MIT 0 0 0 Updated Jul 16, 2024
  • verifybam_pipeline Public
    CERC-Genomic-Medicine/verifybam_pipeline’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jul 8, 2024
  • vep_pipeline Public

    Pipeline for variant annotation using Variant Effect Predictor (VEP)

    CERC-Genomic-Medicine/vep_pipeline’s past year of commit activity
    Jupyter Notebook 5 2 0 0 Updated Jun 26, 2024
  • SV_calling_pipeline Public
    CERC-Genomic-Medicine/SV_calling_pipeline’s past year of commit activity
    Nextflow 1 GPL-3.0 0 0 0 Updated May 17, 2024
  • Phenotype_Filtering_Tool Public
    CERC-Genomic-Medicine/Phenotype_Filtering_Tool’s past year of commit activity
    Python 1 1 1 0 Updated May 14, 2024
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