2024.11.0

.github/workflows/ci.yaml

@@ -0,0 +1,204 @@
+name: CI
+
+on:
+  push:
+    branches: "*"
+  pull_request:
+    branches: main
+
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  coverage:
+    name: coverage
+    runs-on: ubuntu-latest
+    timeout-minutes: 15
+    strategy:
+      fail-fast: false
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+      with:
+        submodules: recursive
+        fetch-depth: 0
+        fetch-tags: true
+
+    - name: Setup Miniconda
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        cache-downloads: true
+        condarc: |
+          channels:
+            - conda-forge
+        create-args: |
+          python=3.12
+        environment-name: pyinterp
+        environment-file: conda/environment.yml
+        init-shell: bash
+
+    - name: Build extension with code coverage and the C++ tests
+      shell: bash -l {0}
+      run: |
+        python setup.py build_ext --code-coverage --build-unittests
+        python setup.py build
+
+    - name: Run tests and measure coverage
+      shell: bash -l {0}
+      run: |
+        pytest -v -ra --cov=pyinterp --cov-report=lcov --measure-coverage
+        python setup.py gtest
+
+    - name: Filter and merge coverage
+      shell: bash -l {0}
+      run: |
+        lcov --add-tracefile coverage_cpp.lcov --add-tracefile coverage.lcov --output-file merged_coverage.lcov
+        lcov -r merged_coverage.lcov "${CONDA_PREFIX}/*" "/usr/*" "*/third_party/*" --output-file filtered_merged_coverage.lcov
+        genhtml filtered_merged_coverage.lcov --output-directory htmllcov
+
+    - name: Print total coverage
+      shell: bash -l {0}
+      run: |
+        percent=$(lcov -l filtered_merged_coverage.lcov|tail -1|grep -o '[0-9]\+\.[0-9]\+%' | head -n 1)
+        echo "Total coverage: $percent"
+
+    - name: Upload HTML report as artifact
+      uses: actions/upload-artifact@v4
+      with:
+        name: coverage-report
+        path: htmllcov
+
+  linux:
+    name: ${{ matrix.python-version }}-posix
+    runs-on: ubuntu-latest
+    timeout-minutes: 15
+    strategy:
+      fail-fast: false
+      max-parallel: 5
+      matrix:
+        # Python 3.12 is used in all other jobs
+        python-version: ['3.10', '3.11', '3.13']
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+      with:
+        submodules: recursive
+        fetch-depth: 0
+        fetch-tags: true
+
+    - name: Setup Miniconda
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        cache-downloads: true
+        condarc: |
+          channels:
+            - conda-forge
+        create-args: |
+          python=${{ matrix.python-version }}
+        environment-name: pyinterp
+        environment-file: conda/environment.yml
+        init-shell: bash
+
+    - name: Build extension
+      shell: bash -l {0}
+      run: |
+        python setup.py build_ext
+        python setup.py build
+
+    - name: Run tests
+      shell: bash -l {0}
+      run: |
+        pytest -v -ra
+
+
+  macos:
+    name: macos
+    runs-on: macos-latest
+    timeout-minutes: 15
+    strategy:
+      fail-fast: false
+      max-parallel: 5
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+      with:
+        submodules: recursive
+        fetch-depth: 0
+        fetch-tags: true
+
+    - name: Setup Miniconda
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        cache-downloads: true
+        condarc: |
+          channels:
+            - conda-forge
+        create-args: |
+          python=3.12
+        environment-name: pyinterp
+        environment-file: conda/environment.yml
+        init-shell: bash
+
+    - name: Build extension
+      shell: bash -l {0}
+      run: |
+        python setup.py build_ext
+        python setup.py build
+
+    - name: Run tests
+      shell: bash -l {0}
+      run: |
+        pytest -v -ra
+
+    - name: Generate Documentation
+      shell: bash -l {0}
+      run: |
+        sphinx-build -b html docs/source docs/build
+
+    - name: Setup Pages
+      uses: actions/configure-pages@v5
+
+    - name: Upload artifact
+      uses: actions/upload-pages-artifact@v3
+      with:
+        path: docs/build
+
+    - name: Deploy to GitHub Pages
+      id: deployment
+      uses: actions/deploy-pages@v4
+
+  win:
+    name: win
+    runs-on: windows-2019
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+      with:
+        submodules: recursive
+
+    - name: Setup Miniconda
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        cache-downloads: true
+        condarc: |
+          channels:
+            - conda-forge
+        create-args: |
+          python=3.12
+        environment-name: pyinterp
+        environment-file: conda/environment.yml
+
+    - name: Building Testing Python Package
+      shell: bash -l {0}
+      run: |
+        python setup.py build_ext --generator="Visual Studio 16 2019"
+        python setup.py build
+        pytest -v -ra

CMakeLists.txt

@@ -243,6 +243,7 @@ else()
   else()
     message(
       WARNING "No BLAS library found. Eigen uses its own BLAS implementation.")
+    set(BLAS_LIBRARIES "")
   endif()
 endif()
 

README.rst

@@ -2,8 +2,8 @@
 pangeo-pyinterp
 ###############
 
-|Build Status| |Azure DevOps Coverage| |Downloads| |Platforms|
-|Latest Release Date| |License| |Binder| |Documentation Status|
+|Build Status| |Downloads| |Platforms|
+|Latest Release Date| |License| |Binder|
 
 Python library for optimized geo-referenced interpolation.
 
@@ -133,9 +133,8 @@ The geohash is a compact way of representing a location, and is useful for
 storing a location in a database, or for indexing a location in a database.
 
 
-.. |Build Status| image:: https://dev.azure.com/fbriol/pangeo-pyinterp/_apis/build/status/CNES.pangeo-pyinterp?branchName=master
-    :target: https://dev.azure.com/fbriol/pangeo-pyinterp/_build/latest?definitionId=2&branchName=master
-.. |Azure DevOps Coverage| image:: https://img.shields.io/azure-devops/coverage/fbriol/pangeo-pyinterp/2?style=flat-square
+.. |Build Status| image:: https://github.com/CNES/pangeo-pyinterp/actions/workflows/ci.yaml/badge.svg
+    :target: https://github.com/CNES/pangeo-pyinterp/actions
 .. |Downloads| image:: https://anaconda.org/conda-forge/pyinterp/badges/downloads.svg?service=github
     :target: image:: https://www.anaconda.com/distribution/
 .. |Platforms| image:: https://anaconda.org/conda-forge/pyinterp/badges/platforms.svg?service=github
@@ -146,5 +145,3 @@ storing a location in a database, or for indexing a location in a database.
     :target: https://opensource.org/licenses/BSD-3-Clause
 .. |Binder| image:: https://mybinder.org/badge_logo.svg
     :target: https://mybinder.org/v2/gh/CNES/pangeo-pyinterp/master?filepath=notebooks/auto_examples/
-.. |Documentation Status| image:: https://readthedocs.org/projects/pangeo-pyinterp/badge/?version=latest
-    :target: https://pangeo-pyinterp.readthedocs.io/en/latest/?badge=latest