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@Cai-Lab-at-University-of-Michigan

Cai Lab at University of Michigan

The Cai Laboratory develops and uses interdisciplinary techniques to study the development and fine tuning of neural circuits in the mouse brain.

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  1. nTracer nTracer Public

    Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.

    Java 5

  2. MiCV MiCV Public

    MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.

    CSS 6

  3. nGauge nGauge Public

    A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.

    Jupyter Notebook 6 1

  4. TraceMontage TraceMontage Public

    A ImageJ/Fiji plugin for the merging of multiple neuron traces between two images, as published in: Dizaji SA, Walker L, and Cai D, Journal of Neuroscience Methods 2019.

    Java 3

  5. public_tracing_datasets public_tracing_datasets Public

    Publicly-released neuron tracing datasets from Cai Lab papers.

    3

Repositories

Showing 10 of 22 repositories
  • nTracer2 Public
    Cai-Lab-at-University-of-Michigan/nTracer2’s past year of commit activity
    Python 0 3 0 0 Updated May 6, 2025
  • pySISF Public

    A Python library for manipulating SISF images.

    Cai-Lab-at-University-of-Michigan/pySISF’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 5, 2025
  • napari-nninteractive Public Forked from MIC-DKFZ/napari-nninteractive

    napari GUI to use nnInteractive for 3D Object Annotation

    Cai-Lab-at-University-of-Michigan/napari-nninteractive’s past year of commit activity
    Python 0 Apache-2.0 11 0 0 Updated May 1, 2025
  • nnInteractive Public Forked from MIC-DKFZ/nnInteractive

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    Cai-Lab-at-University-of-Michigan/nnInteractive’s past year of commit activity
    Python 0 Apache-2.0 13 0 0 Updated Apr 23, 2025
  • napari_toolkit Public Forked from MIC-DKFZ/napari_toolkit

    napari GUI widgets library

    Cai-Lab-at-University-of-Michigan/napari_toolkit’s past year of commit activity
    Python 1 Apache-2.0 3 0 0 Updated Apr 15, 2025
  • SISF_CDN Public

    A tool for remote access of SISF Files

    Cai-Lab-at-University-of-Michigan/SISF_CDN’s past year of commit activity
    C++ 0 MIT 2 0 0 Updated Apr 10, 2025
  • nGauge Public

    A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.

    Cai-Lab-at-University-of-Michigan/nGauge’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 1 4 0 Updated Jan 17, 2025
  • hdf5plugin Public Forked from silx-kit/hdf5plugin

    register lossy ffmpeg compression filters to h5py

    Cai-Lab-at-University-of-Michigan/hdf5plugin’s past year of commit activity
    C 0 25 0 0 Updated Dec 9, 2024
  • ffmpeg_HDF5_filter Public

    A HDF5 filter for compression images using ffmpeg video libraries

    Cai-Lab-at-University-of-Michigan/ffmpeg_HDF5_filter’s past year of commit activity
    C 1 MIT 0 5 (1 issue needs help) 0 Updated Dec 9, 2024
  • stage_controller Public
    Cai-Lab-at-University-of-Michigan/stage_controller’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 5, 2024
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