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prepare release version 3.1.5
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jenkins committed Nov 27, 2014
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Showing 88 changed files with 206 additions and 206 deletions.
6 changes: 3 additions & 3 deletions org.caleydo.core/META-INF/MANIFEST.MF
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Expand Up @@ -2,7 +2,7 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Caleydo Core Plug-in
Bundle-SymbolicName: org.caleydo.core;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Export-Package: org.caleydo.core.data.collection,
org.caleydo.core.data.collection.column;
uses:="org.caleydo.core.data.collection,
Expand Down Expand Up @@ -234,8 +234,8 @@ Export-Package: org.caleydo.core.data.collection,
org.eclipse.swt.widgets",
org.caleydo.core.view.contextmenu.item;uses:="org.caleydo.core.event.data,org.caleydo.core.view.contextmenu,org.caleydo.core.id"
Require-Bundle: org.eclipse.core.runtime;bundle-version="3.9.0";visibility:=reexport,
org.caleydo.data;bundle-version="3.1.4.qualifier";visibility:=reexport,
org.caleydo.util.gleem;bundle-version="3.1.4.qualifier";visibility:=reexport,
org.caleydo.data;bundle-version="3.1.5";visibility:=reexport,
org.caleydo.util.gleem;bundle-version="3.1.5";visibility:=reexport,
com.google.guava;bundle-version="[15.0.0,16.0.0)";visibility:=reexport,
org.apache.commons.lang;bundle-version="2.6.0";visibility:=reexport,
org.eclipse.nebula.widgets.nattable.core;bundle-version="[1.1.1,1.2.0)";visibility:=reexport,
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2 changes: 1 addition & 1 deletion org.caleydo.core/filtered/version.properties
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@@ -1,4 +1,4 @@
#the version of the manifest
caleydo.version=3.1.4.qualifier
caleydo.version=3.1.5
#the version of maven injected by maven
caleydo.version.maven=${project.version}
2 changes: 1 addition & 1 deletion org.caleydo.core/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.core</artifactId>
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12 changes: 6 additions & 6 deletions org.caleydo.data.importer/META-INF/MANIFEST.MF
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Expand Up @@ -2,21 +2,21 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Caleydo Data Importer
Bundle-SymbolicName: org.caleydo.data.importer;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Export-Package:
org.caleydo.data.importer;uses:="org.eclipse.core.runtime,org.eclipse.equinox.app,org.osgi.framework",
org.caleydo.data.importer.jkubioinfo,
org.caleydo.data.importer.tcga
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
Bundle-ActivationPolicy: lazy
Bundle-Vendor: www.caleydo.org
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.generic;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.genetic;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.pathway;bundle-version="3.1.4.qualifier",
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.caleydo.datadomain.generic;bundle-version="3.1.5",
org.caleydo.datadomain.genetic;bundle-version="3.1.5",
org.caleydo.datadomain.pathway;bundle-version="3.1.5",
com.google.gson;bundle-version="2.1.0",
org.apache.commons.compress;bundle-version="1.4.1",
org.caleydo.view.tourguide;bundle-version="3.1.4.qualifier",
org.caleydo.view.tourguide;bundle-version="3.1.5",
com.google.guava;bundle-version="[15.0.0,16.0.0)",
org.kohsuke.args4j;bundle-version="2.0.21"
Bundle-Activator: org.caleydo.data.importer.Activator
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2 changes: 1 addition & 1 deletion org.caleydo.data.importer/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.data.importer</artifactId>
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8 changes: 4 additions & 4 deletions org.caleydo.data.pathway.kegg/META-INF/MANIFEST.MF
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Expand Up @@ -2,10 +2,10 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: KEGG Pathways
Bundle-SymbolicName: org.caleydo.data.pathway.kegg;singleton:=true
Bundle-Version: 3.1.4.qualifier
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.pathway;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.genetic;bundle-version="3.1.4.qualifier",
Bundle-Version: 3.1.5
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.caleydo.datadomain.pathway;bundle-version="3.1.5",
org.caleydo.datadomain.genetic;bundle-version="3.1.5",
org.eclipse.ui;bundle-version="3.105.0"
Bundle-ActivationPolicy: lazy
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
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2 changes: 1 addition & 1 deletion org.caleydo.data.pathway.kegg/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.data.pathway.kegg</artifactId>
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10 changes: 5 additions & 5 deletions org.caleydo.data.pathway.wikipathways/META-INF/MANIFEST.MF
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Expand Up @@ -2,11 +2,11 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Wikipathways
Bundle-SymbolicName: org.caleydo.data.pathway.wikipathways;singleton:=true
Bundle-Version: 3.1.4.qualifier
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.pathway;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.generic;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.genetic;bundle-version="3.1.4.qualifier",
Bundle-Version: 3.1.5
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.caleydo.datadomain.pathway;bundle-version="3.1.5",
org.caleydo.datadomain.generic;bundle-version="3.1.5",
org.caleydo.datadomain.genetic;bundle-version="3.1.5",
org.caleydo.thirdparty.pathvisio;bundle-version="31.0.0",
org.eclipse.ui;bundle-version="3.105.0"
Bundle-ActivationPolicy: lazy
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2 changes: 1 addition & 1 deletion org.caleydo.data.pathway.wikipathways/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.data.pathway.wikipathways</artifactId>
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4 changes: 2 additions & 2 deletions org.caleydo.data.tcga/META-INF/MANIFEST.MF
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Expand Up @@ -2,10 +2,10 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: TCGA
Bundle-SymbolicName: org.caleydo.data.tcga;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-Activator: org.caleydo.data.tcga.internal.Activator
Require-Bundle: org.eclipse.core.runtime,
org.caleydo.core;bundle-version="3.1.4.qualifier",
org.caleydo.core;bundle-version="3.1.5",
com.google.gson;bundle-version="2.2.4",
org.eclipse.jface;bundle-version="3.9.1"
Bundle-ActivationPolicy: lazy
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2 changes: 1 addition & 1 deletion org.caleydo.data.tcga/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.data.tcga</artifactId>
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2 changes: 1 addition & 1 deletion org.caleydo.data/META-INF/MANIFEST.MF
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Expand Up @@ -2,7 +2,7 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Caleydo Resources
Bundle-SymbolicName: org.caleydo.data;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-Vendor: www.caleydo.org
Export-Package: org.caleydo.data.loader
Bundle-ClassPath: .,
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2 changes: 1 addition & 1 deletion org.caleydo.data/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.data</artifactId>
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4 changes: 2 additions & 2 deletions org.caleydo.datadomain.generic/META-INF/MANIFEST.MF
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Expand Up @@ -2,8 +2,8 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Generic Data Domain
Bundle-SymbolicName: org.caleydo.datadomain.generic;singleton:=true
Bundle-Version: 3.1.4.qualifier
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
Bundle-Version: 3.1.5
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.eclipse.ui;bundle-version="3.105.0",
org.kohsuke.args4j;bundle-version="2.0.21"
Bundle-ActivationPolicy: lazy
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2 changes: 1 addition & 1 deletion org.caleydo.datadomain.generic/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.datadomain.generic</artifactId>
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4 changes: 2 additions & 2 deletions org.caleydo.datadomain.genetic/META-INF/MANIFEST.MF
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Expand Up @@ -2,9 +2,9 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Genetic Data Domain
Bundle-SymbolicName: org.caleydo.datadomain.genetic;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-Vendor: www.caleydo.org
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.eclipse.ui;bundle-version="3.105.0",
org.kohsuke.args4j;bundle-version="2.0.21"
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
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2 changes: 1 addition & 1 deletion org.caleydo.datadomain.genetic/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.datadomain.genetic</artifactId>
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6 changes: 3 additions & 3 deletions org.caleydo.datadomain.image/META-INF/MANIFEST.MF
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Expand Up @@ -2,11 +2,11 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Image Data Domain
Bundle-SymbolicName: org.caleydo.datadomain.image;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-Activator: org.caleydo.datadomain.image.Activator
Bundle-Vendor: www.caleydo.org
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.genetic;bundle-version="3.1.4.qualifier",
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.caleydo.datadomain.genetic;bundle-version="3.1.5",
org.eclipse.jface,
org.eclipse.swt
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
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2 changes: 1 addition & 1 deletion org.caleydo.datadomain.image/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.datadomain.image</artifactId>
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8 changes: 4 additions & 4 deletions org.caleydo.datadomain.pathway/META-INF/MANIFEST.MF
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Expand Up @@ -2,12 +2,12 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Pathway Data Domain
Bundle-SymbolicName: org.caleydo.datadomain.pathway;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-Activator: org.caleydo.datadomain.pathway.Activator
Bundle-Vendor: www.caleydo.org
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
org.caleydo.datadomain.genetic;bundle-version="3.1.4.qualifier",
org.caleydo.ui;bundle-version="3.1.4.qualifier"
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.caleydo.datadomain.genetic;bundle-version="3.1.5",
org.caleydo.ui;bundle-version="3.1.5"
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
Bundle-ActivationPolicy: lazy
Export-Package: org.caleydo.datadomain.pathway,
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2 changes: 1 addition & 1 deletion org.caleydo.datadomain.pathway/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.datadomain.pathway</artifactId>
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2 changes: 1 addition & 1 deletion org.caleydo.internal/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.internal</artifactId>
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2 changes: 1 addition & 1 deletion org.caleydo.parent/pom.xml
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Expand Up @@ -4,7 +4,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<packaging>pom</packaging>
<url>https://github.com/Caleydo/caleydo</url>

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6 changes: 3 additions & 3 deletions org.caleydo.rcp/META-INF/MANIFEST.MF
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Expand Up @@ -2,13 +2,13 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Caleydo RCP Plug-in
Bundle-SymbolicName: org.caleydo.rcp;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-ClassPath: .
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
Bundle-ActivationPolicy: lazy
Bundle-Vendor: www.caleydo.org
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
org.caleydo.ui;bundle-version="3.1.4.qualifier",
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.caleydo.ui;bundle-version="3.1.5",
org.kohsuke.args4j;bundle-version="2.0.21",
org.eclipse.ui.net,
org.eclipse.equinox.event;bundle-version="1.3.100",
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2 changes: 1 addition & 1 deletion org.caleydo.rcp/OSGI-INF/l10n/bundle.properties
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Expand Up @@ -3,7 +3,7 @@ appName=Caleydo
aboutText = Caleydo - Visualization for Molecular Biology\n\
http://caleydo.org\n\
\n\
Version: 3.1.4.qualifier\n\
Version: 3.1.5\n\
\n\
Copyright 2008 - 2014 by the Caleydo Team.\n\
\n\
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2 changes: 1 addition & 1 deletion org.caleydo.rcp/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.rcp</artifactId>
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4 changes: 2 additions & 2 deletions org.caleydo.ui/META-INF/MANIFEST.MF
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Expand Up @@ -2,7 +2,7 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Caleydo UI Plug-in
Bundle-SymbolicName: org.caleydo.ui;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-ClassPath: .
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
Bundle-ActivationPolicy: lazy
Expand Down Expand Up @@ -97,7 +97,7 @@ Export-Package: org.caleydo.core.event.view;
org.caleydo.core.view.swt;uses:="org.caleydo.core.event,org.caleydo.core.view,org.eclipse.swt.widgets",
org.caleydo.core.view.util,
org.caleydo.data.loader
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.caleydo.thirdparty.jogl;bundle-version="[2.2.0,2.3.0)";visibility:=reexport,
org.eclipse.ui;bundle-version="3.105.0";visibility:=reexport
Bundle-Activator: org.caleydo.core.view.internal.Activator
2 changes: 1 addition & 1 deletion org.caleydo.ui/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.ui</artifactId>
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4 changes: 2 additions & 2 deletions org.caleydo.util.alg/META-INF/MANIFEST.MF
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Expand Up @@ -2,11 +2,11 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Algorithms
Bundle-SymbolicName: org.caleydo.util.alg;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
Bundle-Vendor: www.caleydo.org
Bundle-ActivationPolicy: lazy
Require-Bundle: org.caleydo.core;bundle-version="3.1.4.qualifier",
Require-Bundle: org.caleydo.core;bundle-version="3.1.5",
org.apache.commons.math;bundle-version="2.1.0"
Export-Package: edu.northwestern.at.utils.math,
edu.northwestern.at.utils.math.statistics,
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2 changes: 1 addition & 1 deletion org.caleydo.util.alg/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.util.alg</artifactId>
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4 changes: 2 additions & 2 deletions org.caleydo.util.bubblesets/META-INF/MANIFEST.MF
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Expand Up @@ -2,12 +2,12 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Bubblesets
Bundle-SymbolicName: org.caleydo.util.bubblesets
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
Export-Package: setvis,
setvis.bubbleset,
setvis.ch,
setvis.gui,
setvis.shape
Require-Bundle: org.caleydo.thirdparty.jogl;bundle-version="[2.2.0,2.3.0)",
org.caleydo.core;bundle-version="3.1.4.qualifier"
org.caleydo.core;bundle-version="3.1.5"
2 changes: 1 addition & 1 deletion org.caleydo.util.bubblesets/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.util.bubblesets</artifactId>
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2 changes: 1 addition & 1 deletion org.caleydo.util.gleem/META-INF/MANIFEST.MF
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Expand Up @@ -2,7 +2,7 @@ Manifest-Version: 1.0
Bundle-ManifestVersion: 2
Bundle-Name: Gleem Plug-in
Bundle-SymbolicName: org.caleydo.util.gleem;singleton:=true
Bundle-Version: 3.1.4.qualifier
Bundle-Version: 3.1.5
Export-Package: gleem,
gleem.linalg,
gleem.linalg.open
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2 changes: 1 addition & 1 deletion org.caleydo.util.gleem/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.caleydo</groupId>
<artifactId>org.caleydo.parent</artifactId>
<version>3.1.4-SNAPSHOT</version>
<version>3.1.5</version>
<relativePath>../org.caleydo.parent</relativePath>
</parent>
<artifactId>org.caleydo.util.gleem</artifactId>
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