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W_Measurements-CellProfiler

Full measurements and feature extraction for 2D images with CellProfiler 4.2.6, that have 3 masks:

  • (1) A Cell Mask
  • (2) A Nucleus Mask
  • (3) An Aggregates/Foci Mask

Integration with BIOMERO

You can add this workflow to BIOMERO to run on HPC from OMERO web.

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  • Python 92.4%
  • Dockerfile 7.6%