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multithreading smith waterman alignment algorithm in c++

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Cheaterpaul/smith-waterman-alignment

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Compile

  1. run cmake -S . -B build/
  2. run make -C build

Run

the binary is build/genom

run ./build/genom <input-file-1> <input-file-2> <threads> <output-file>

plot the result

run ./plotSMSresults.py <output-file>

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