ChimPipe version 0.9.1

New features

• Multimapped split-reads considered for chimera detection.
• New ChimPE module. Search for consistent paired-end supporting the existence of each chimeric junction. Chimeric junctions do not supported by at least one consistent paired-end will be discarded in the filtering module as false positives.
• New ChimFilter module. Improves ChimPipe precision by filtering chimeric junctions according to 8 different criteria (number of spanning reads, consistent pairs, novel splice-sites, gene homology..). Completely tunable.
• New output file containing the filtered chimeric junctions and the reason why they were filtered out.
• Additional pieces of information provided for each chimeric junction (number of consistent paired-end, supporting reads identifier ...).

Bug fixes

• Fixed problem in ChimSplice. Coordinates went into over the chromosome limits and the script failed, added an upper and lower bound.