Cholera Bioinformatics Workshop

Training dates: February 19-23, 2024

This page contains documentation for the hands-on exercises throughout the workshop.

A Terra workspace has been created for the training that contains cholera data and tools. We will use this workspace for hands-on exercises throughout the week.

• Workspace setup
• Uploading your own data
• Bacterial de novo assembly and typing
• Bacterial assembly QC reports
• Reference based assembly for O1 Vibro cholerae
• Vibrio cholerae QC reports
• Vibrio cholerae O1 recombination aware phylogenomics