(1) Changed: Set new recursice method as default in cat_vol_approx.m.

(2) Changed: Removed any "-linear" flags from calls to CAT_3dVol2Surf because this is not supported anymore. (3) Changed: Set pbtsimple as default. (4) Changed: Additionally keep largest structure and fill remaining holes incat_surf_createCS3.m before callung CAT_MarchingCubesGenus0. (5) Fixed: Corrected handling of smoothing size if defined as vector in cat_vol_smooth3X.m. (6) Fixed: Corrected celltype in catstat_check_cov_old.m. Changed paths: M CAT.glnx86/CAT_3dVol2Surf M CAT.glnx86/CAT_AddValuesToSurf M CAT.glnx86/CAT_AverageSurfaces M CAT.glnx86/CAT_BlurSurfHK M CAT.glnx86/CAT_Central2Pial M CAT.glnx86/CAT_DeformSurf M CAT.glnx86/CAT_DumpCurv M CAT.glnx86/CAT_DumpSurfArea M CAT.glnx86/CAT_DumpSurfaceRatio M CAT.glnx86/CAT_FixTopology M CAT.glnx86/CAT_FractalDimension M CAT.glnx86/CAT_Hausdorff M CAT.glnx86/CAT_Isometize M CAT.glnx86/CAT_MarchingCubesGenus0 M CAT.glnx86/CAT_MarkDefects M CAT.glnx86/CAT_RefineMesh M CAT.glnx86/CAT_ResampleSphericalSurf M CAT.glnx86/CAT_ResampleSphericalSurfSPH M CAT.glnx86/CAT_ResampleSurf M CAT.glnx86/CAT_SelfIntersect M CAT.glnx86/CAT_SeparatePolygon M CAT.glnx86/CAT_SmoothConvexity M CAT.glnx86/CAT_SulcusDepth M CAT.glnx86/CAT_Surf2Sphere M CAT.glnx86/CAT_Surf2Vol M CAT.glnx86/CAT_SurfDistance M CAT.glnx86/CAT_WarpSurf M CAT.maca64/CAT_3dVol2Surf M CAT.maca64/CAT_AddValuesToSurf M CAT.maca64/CAT_AverageSurfaces M CAT.maca64/CAT_BlurSurfHK M CAT.maca64/CAT_Central2Pial M CAT.maca64/CAT_DeformSurf M CAT.maca64/CAT_DumpCurv M CAT.maca64/CAT_DumpSurfArea M CAT.maca64/CAT_DumpSurfaceRatio M CAT.maca64/CAT_FixTopology M CAT.maca64/CAT_FractalDimension M CAT.maca64/CAT_Hausdorff M CAT.maca64/CAT_Isometize M CAT.maca64/CAT_MarchingCubesGenus0 M CAT.maca64/CAT_MarkDefects M CAT.maca64/CAT_RefineMesh M CAT.maca64/CAT_ResampleSphericalSurf M CAT.maca64/CAT_ResampleSphericalSurfSPH M CAT.maca64/CAT_ResampleSurf M CAT.maca64/CAT_SelfIntersect M CAT.maca64/CAT_SeparatePolygon M CAT.maca64/CAT_SmoothConvexity M CAT.maca64/CAT_SulcusDepth M CAT.maca64/CAT_Surf2Sphere M CAT.maca64/CAT_Surf2Vol M CAT.maca64/CAT_SurfDistance M CAT.maca64/CAT_WarpSurf M CAT.maci64/CAT_3dVol2Surf M CAT.maci64/CAT_AddValuesToSurf M CAT.maci64/CAT_AverageSurfaces M CAT.maci64/CAT_BlurSurfHK M CAT.maci64/CAT_Central2Pial M CAT.maci64/CAT_DeformSurf M CAT.maci64/CAT_DumpCurv M CAT.maci64/CAT_DumpSurfArea M CAT.maci64/CAT_DumpSurfaceRatio M CAT.maci64/CAT_FixTopology M CAT.maci64/CAT_FractalDimension M CAT.maci64/CAT_Hausdorff M CAT.maci64/CAT_Isometize M CAT.maci64/CAT_MarchingCubesGenus0 M CAT.maci64/CAT_MarkDefects M CAT.maci64/CAT_RefineMesh M CAT.maci64/CAT_ResampleSphericalSurf M CAT.maci64/CAT_ResampleSphericalSurfSPH M CAT.maci64/CAT_ResampleSurf M CAT.maci64/CAT_SelfIntersect M CAT.maci64/CAT_SeparatePolygon M CAT.maci64/CAT_SmoothConvexity M CAT.maci64/CAT_SulcusDepth M CAT.maci64/CAT_Surf2Sphere M CAT.maci64/CAT_Surf2Vol M CAT.maci64/CAT_SurfDistance M CAT.maci64/CAT_WarpSurf M CAT.w32/CAT_3dVol2Surf.exe M CAT.w32/CAT_AddValuesToSurf.exe M CAT.w32/CAT_AverageSurfaces.exe M CAT.w32/CAT_BlurSurfHK.exe M CAT.w32/CAT_Central2Pial.exe M CAT.w32/CAT_DeformSurf.exe M CAT.w32/CAT_DumpCurv.exe M CAT.w32/CAT_DumpSurfArea.exe M CAT.w32/CAT_DumpSurfaceRatio.exe M CAT.w32/CAT_FixTopology.exe M CAT.w32/CAT_FractalDimension.exe M CAT.w32/CAT_Hausdorff.exe M CAT.w32/CAT_Isometize.exe M CAT.w32/CAT_MarchingCubesGenus0.exe M CAT.w32/CAT_MarkDefects.exe M CAT.w32/CAT_RefineMesh.exe M CAT.w32/CAT_ResampleSphericalSurf.exe M CAT.w32/CAT_ResampleSphericalSurfSPH.exe M CAT.w32/CAT_ResampleSurf.exe M CAT.w32/CAT_SelfIntersect.exe M CAT.w32/CAT_SeparatePolygon.exe M CAT.w32/CAT_SmoothConvexity.exe M CAT.w32/CAT_SulcusDepth.exe M CAT.w32/CAT_Surf2Sphere.exe M CAT.w32/CAT_Surf2Vol.exe M CAT.w32/CAT_SurfDistance.exe M CAT.w32/CAT_WarpSurf.exe M CHANGES.txt M Contents.m M cat_conf_extopts.m M cat_main.m M cat_main1639.m M cat_stat_check_cov_old.m M cat_surf_createCS2.m M cat_surf_createCS3.m M cat_surf_fun.m M cat_surf_results.m M cat_surf_vol2surf.m M cat_vol_approx.m M cat_vol_smooth3X.m M doc/cat.html
ChristianGaser · Dec 22, 2023 · 1be0149 · 1be0149
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diff --git a/CAT.glnx86/CAT_3dVol2Surf b/CAT.glnx86/CAT_3dVol2Surf
diff --git a/CAT.glnx86/CAT_AddValuesToSurf b/CAT.glnx86/CAT_AddValuesToSurf
diff --git a/CAT.glnx86/CAT_AverageSurfaces b/CAT.glnx86/CAT_AverageSurfaces
diff --git a/CAT.glnx86/CAT_BlurSurfHK b/CAT.glnx86/CAT_BlurSurfHK
diff --git a/CAT.glnx86/CAT_Central2Pial b/CAT.glnx86/CAT_Central2Pial
diff --git a/CAT.glnx86/CAT_DeformSurf b/CAT.glnx86/CAT_DeformSurf
diff --git a/CAT.glnx86/CAT_DumpCurv b/CAT.glnx86/CAT_DumpCurv
diff --git a/CAT.glnx86/CAT_DumpSurfArea b/CAT.glnx86/CAT_DumpSurfArea
diff --git a/CAT.glnx86/CAT_DumpSurfaceRatio b/CAT.glnx86/CAT_DumpSurfaceRatio
diff --git a/CAT.glnx86/CAT_FixTopology b/CAT.glnx86/CAT_FixTopology
diff --git a/CAT.glnx86/CAT_FractalDimension b/CAT.glnx86/CAT_FractalDimension
diff --git a/CAT.glnx86/CAT_Hausdorff b/CAT.glnx86/CAT_Hausdorff
diff --git a/CAT.glnx86/CAT_Isometize b/CAT.glnx86/CAT_Isometize
diff --git a/CAT.glnx86/CAT_MarchingCubesGenus0 b/CAT.glnx86/CAT_MarchingCubesGenus0
diff --git a/CAT.glnx86/CAT_MarkDefects b/CAT.glnx86/CAT_MarkDefects
diff --git a/CAT.glnx86/CAT_RefineMesh b/CAT.glnx86/CAT_RefineMesh
diff --git a/CAT.glnx86/CAT_ResampleSphericalSurf b/CAT.glnx86/CAT_ResampleSphericalSurf
diff --git a/CAT.glnx86/CAT_ResampleSphericalSurfSPH b/CAT.glnx86/CAT_ResampleSphericalSurfSPH
diff --git a/CAT.glnx86/CAT_ResampleSurf b/CAT.glnx86/CAT_ResampleSurf
diff --git a/CAT.glnx86/CAT_SelfIntersect b/CAT.glnx86/CAT_SelfIntersect
diff --git a/CAT.glnx86/CAT_SeparatePolygon b/CAT.glnx86/CAT_SeparatePolygon
diff --git a/CAT.glnx86/CAT_SmoothConvexity b/CAT.glnx86/CAT_SmoothConvexity
diff --git a/CAT.glnx86/CAT_SulcusDepth b/CAT.glnx86/CAT_SulcusDepth
diff --git a/CAT.glnx86/CAT_Surf2Sphere b/CAT.glnx86/CAT_Surf2Sphere
diff --git a/CAT.glnx86/CAT_Surf2Vol b/CAT.glnx86/CAT_Surf2Vol
diff --git a/CAT.glnx86/CAT_SurfDistance b/CAT.glnx86/CAT_SurfDistance
diff --git a/CAT.glnx86/CAT_WarpSurf b/CAT.glnx86/CAT_WarpSurf
diff --git a/CAT.maca64/CAT_3dVol2Surf b/CAT.maca64/CAT_3dVol2Surf
diff --git a/CAT.maca64/CAT_AddValuesToSurf b/CAT.maca64/CAT_AddValuesToSurf
diff --git a/CAT.maca64/CAT_AverageSurfaces b/CAT.maca64/CAT_AverageSurfaces
diff --git a/CAT.maca64/CAT_BlurSurfHK b/CAT.maca64/CAT_BlurSurfHK
diff --git a/CAT.maca64/CAT_Central2Pial b/CAT.maca64/CAT_Central2Pial
diff --git a/CAT.maca64/CAT_DeformSurf b/CAT.maca64/CAT_DeformSurf
diff --git a/CAT.maca64/CAT_DumpCurv b/CAT.maca64/CAT_DumpCurv
diff --git a/CAT.maca64/CAT_DumpSurfArea b/CAT.maca64/CAT_DumpSurfArea
diff --git a/CAT.maca64/CAT_DumpSurfaceRatio b/CAT.maca64/CAT_DumpSurfaceRatio
diff --git a/CAT.maca64/CAT_FixTopology b/CAT.maca64/CAT_FixTopology
diff --git a/CAT.maca64/CAT_FractalDimension b/CAT.maca64/CAT_FractalDimension
diff --git a/CAT.maca64/CAT_Hausdorff b/CAT.maca64/CAT_Hausdorff
diff --git a/CAT.maca64/CAT_Isometize b/CAT.maca64/CAT_Isometize
diff --git a/CAT.maca64/CAT_MarchingCubesGenus0 b/CAT.maca64/CAT_MarchingCubesGenus0
diff --git a/CAT.maca64/CAT_MarkDefects b/CAT.maca64/CAT_MarkDefects
diff --git a/CAT.maca64/CAT_RefineMesh b/CAT.maca64/CAT_RefineMesh
diff --git a/CAT.maca64/CAT_ResampleSphericalSurf b/CAT.maca64/CAT_ResampleSphericalSurf
diff --git a/CAT.maca64/CAT_ResampleSphericalSurfSPH b/CAT.maca64/CAT_ResampleSphericalSurfSPH
diff --git a/CAT.maca64/CAT_ResampleSurf b/CAT.maca64/CAT_ResampleSurf
diff --git a/CAT.maca64/CAT_SelfIntersect b/CAT.maca64/CAT_SelfIntersect
diff --git a/CAT.maca64/CAT_SeparatePolygon b/CAT.maca64/CAT_SeparatePolygon
diff --git a/CAT.maca64/CAT_SmoothConvexity b/CAT.maca64/CAT_SmoothConvexity
diff --git a/CAT.maca64/CAT_SulcusDepth b/CAT.maca64/CAT_SulcusDepth
diff --git a/CAT.maca64/CAT_Surf2Sphere b/CAT.maca64/CAT_Surf2Sphere
diff --git a/CAT.maca64/CAT_Surf2Vol b/CAT.maca64/CAT_Surf2Vol
diff --git a/CAT.maca64/CAT_SurfDistance b/CAT.maca64/CAT_SurfDistance
diff --git a/CAT.maca64/CAT_WarpSurf b/CAT.maca64/CAT_WarpSurf
diff --git a/CAT.maci64/CAT_3dVol2Surf b/CAT.maci64/CAT_3dVol2Surf
diff --git a/CAT.maci64/CAT_AddValuesToSurf b/CAT.maci64/CAT_AddValuesToSurf
diff --git a/CAT.maci64/CAT_AverageSurfaces b/CAT.maci64/CAT_AverageSurfaces
diff --git a/CAT.maci64/CAT_BlurSurfHK b/CAT.maci64/CAT_BlurSurfHK
diff --git a/CAT.maci64/CAT_Central2Pial b/CAT.maci64/CAT_Central2Pial
diff --git a/CAT.maci64/CAT_DeformSurf b/CAT.maci64/CAT_DeformSurf
diff --git a/CAT.maci64/CAT_DumpCurv b/CAT.maci64/CAT_DumpCurv
diff --git a/CAT.maci64/CAT_DumpSurfArea b/CAT.maci64/CAT_DumpSurfArea
diff --git a/CAT.maci64/CAT_DumpSurfaceRatio b/CAT.maci64/CAT_DumpSurfaceRatio
diff --git a/CAT.maci64/CAT_FixTopology b/CAT.maci64/CAT_FixTopology
diff --git a/CAT.maci64/CAT_FractalDimension b/CAT.maci64/CAT_FractalDimension
diff --git a/CAT.maci64/CAT_Hausdorff b/CAT.maci64/CAT_Hausdorff
diff --git a/CAT.maci64/CAT_Isometize b/CAT.maci64/CAT_Isometize
diff --git a/CAT.maci64/CAT_MarchingCubesGenus0 b/CAT.maci64/CAT_MarchingCubesGenus0
diff --git a/CAT.maci64/CAT_MarkDefects b/CAT.maci64/CAT_MarkDefects
diff --git a/CAT.maci64/CAT_RefineMesh b/CAT.maci64/CAT_RefineMesh
diff --git a/CAT.maci64/CAT_ResampleSphericalSurf b/CAT.maci64/CAT_ResampleSphericalSurf
diff --git a/CAT.maci64/CAT_ResampleSphericalSurfSPH b/CAT.maci64/CAT_ResampleSphericalSurfSPH
diff --git a/CAT.maci64/CAT_ResampleSurf b/CAT.maci64/CAT_ResampleSurf