Changed: Updated references.

Changed paths:
 M CHANGES.txt
 M cat_vol_pbtsimple.m
 M doc/cat.txt
 M doc/index.html

CHANGES.txt

@@ -1,4 +1,14 @@
 ------------------------------------------------------------------------
+r2596 | gaser | 2024-08-07 11:03:33
+
+Changed paths:
+ M CHANGES.txt
+ M cat_vol_pbtsimple.m
+ M doc/cat.txt
+ M doc/index.html
+
+Changed: Updated references.
+------------------------------------------------------------------------
 r2595 | gaser | 2024-07-08 21:03:40
 
 Changed paths:

cat_vol_pbtsimple.m

@@ -231,7 +231,7 @@
   % this still support some small benefits.  
   % - Basic tests in ADHD200NYC and Collins. 
   if  opt.gyrusrecon == 0
-  % Using the PBT apporach only to reconstruct the sulci.
+  % Using the PBT approach only to reconstruct the sulci.
     distcorval = 0.5; % in theory 0.5 
 
     % remove highly distant outliers
@@ -240,7 +240,7 @@
     % projection-based thickness mapping
     Ygmt = cat_vol_pbtp( round(Yp0) , Ywd, Ycd);
 
-    % now correct also this values (it is a bit better this way)
+    % now correct also these values (it is a bit better this way)
     Ycd = max(0,Ycd - distcorval); Ywd = max(0,Ywd - distcorval); 
 
     % minimum to reduce issues with meninges

doc/cat.txt

@@ -33,7 +33,7 @@
       Please <a href="matlab:web(fullfile(fileparts(which('cat12')),'doc','index.html#cite'),'-new');">cite our papers</a> and the work of other researchers if you use this software.</p><p>
       Our main paper is:<br>
       Gaser C, Dahnke R, P.M. Thompson, Kurth K, Luders E, Alzheimer's Disease Neuroimaging Initiative.<br>
-      <a href="matlab:web('https://www.biorxiv.org/content/10.1101/2022.06.11.495736','-new');">A Computational Anatomy Toolbox for the Analysis of Structural MRI Data.</a>
+      <a href="matlab:web('https://doi.org/10.1093/gigascience/giae049','-new');">CAT: a computational anatomy toolbox for the analysis of structural MRI data.</a>
       </p>
     </div>        
 

doc/index.html

@@ -3837,8 +3837,9 @@ <h2 id="cite">Citing CAT12</h2>
             <p>If you use CAT12, please cite the following references in your work:</p>
 
             <p><u>CAT12 (in General)</u><br>
-            Gaser C, Dahnke R, Thompson PM, Kurth F, Luders E, Alzheimer&quot;s Disease Neuroimaging Initiative. <a href="https://www.biorxiv.org/content/10.1101/2022.06.11.495736">
-            A Computational Anatomy Toolbox for the Analysis of Structural MRI Data.</a> bioRxiv.</p>
+            Gaser C, Dahnke R, Thompson PM, Kurth F, Luders E, Alzheimer&quot;s Disease Neuroimaging Initiative (2024).
+            <a href="https://doi.org/10.1093/gigascience/giae049">
+            CAT: a computational anatomy toolbox for the analysis of structural MRI data.</a> GigaScience 13, giae049.</p>
 
             <p><u>Surface Estimation</u><br>
             Dahnke R, Yotter RA, Gaser C. <a href="https://doi.org/10.1016/j.neuroimage.2012.09.050">
@@ -3954,8 +3955,8 @@ <h2 id="refs">References</h2>
             <p>C. Gaser, I. Nenadic, B. Buchsbaum, E. Hazlett, M. S. Buchsbaum (2001). <a href="https://doi.org/10.1006/nimg.2001.0771">
             Deformation-based morphometry and its relation to conventional volumetry of brain lateral ventricles in MRI.</a> Neuroimage 13:1140-1145.</p>
 
-            <p>C. Gaser, R. Dahnke, P.M. Thompson, F. Kurth, E. Luders, Alzheimer&quot;s Disease Neuroimaging Initiative. <a href="https://www.biorxiv.org/content/10.1101/2022.06.11.495736">
-            A Computational Anatomy Toolbox for the Analysis of Structural MRI Data.</a> bioRxiv</p>
+            <p>C. Gaser, R. Dahnke, P.M. Thompson, F. Kurth, E. Luders, Alzheimer&quot;s Disease Neuroimaging Initiative (2024). <a href="https://doi.org/10.1093/gigascience/giae049">
+            CAT: a computational anatomy toolbox for the analysis of structural MRI data.</a> GigaScience 13, giae049.</p>
 
             <p>R. Dahnke, R. Yotter, C. Gaser (2012a). <a href="https://doi.org/10.1016/j.neuroimage.2012.09.050">
             Cortical thickness and central surface estimation.</a> Neuroimage 65: 336-348.</p>