Skip to content

Commit

Permalink
Fixed: Removed search for missing binaries in cat_system because this…
Browse files Browse the repository at this point in the history
… does

         not work on Windows.
Changed: If Hessian is negativ in cat_vol_groupwise_ls.m , this issue can be
         solved by recalculating the bsplins coefficients with different border
         condition.

Changed paths:
 M CHANGES.txt
 M Contents.m
 D cat12/Amap.c
 D cat12/Amap.h
 D cat12/CAT.glnx86/CAT_3dVol2Surf
 D cat12/CAT.glnx86/CAT_AddValuesToSurf
 D cat12/CAT.glnx86/CAT_AverageSurfaces
 D cat12/CAT.glnx86/CAT_BlurSurfHK
 D cat12/CAT.glnx86/CAT_Central2Pial
 D cat12/CAT.glnx86/CAT_DeformSurf
 D cat12/CAT.glnx86/CAT_DumpCurv
 D cat12/CAT.glnx86/CAT_DumpSurfArea
 D cat12/CAT.glnx86/CAT_DumpSurfaceRatio
 D cat12/CAT.glnx86/CAT_FixTopology
 D cat12/CAT.glnx86/CAT_FractalDimension
 D cat12/CAT.glnx86/CAT_Hausdorff
 D cat12/CAT.glnx86/CAT_Isometize
 D cat12/CAT.glnx86/CAT_MarchingCubesGenus0
 D cat12/CAT.glnx86/CAT_MarkDefects
 D cat12/CAT.glnx86/CAT_RefineMesh
 D cat12/CAT.glnx86/CAT_ResampleSphericalSurf
 D cat12/CAT.glnx86/CAT_ResampleSphericalSurfSPH
 D cat12/CAT.glnx86/CAT_ResampleSurf
 D cat12/CAT.glnx86/CAT_SelfIntersect
 D cat12/CAT.glnx86/CAT_SeparatePolygon
 D cat12/CAT.glnx86/CAT_SmoothConvexity
 D cat12/CAT.glnx86/CAT_SulcusDepth
 D cat12/CAT.glnx86/CAT_Surf2Sphere
 D cat12/CAT.glnx86/CAT_SurfDistance
 D cat12/CAT.glnx86/CAT_VolMarchingCubes
 D cat12/CAT.glnx86/CAT_WarpSurf
 D cat12/CAT.maca64/CAT_3dVol2Surf
 D cat12/CAT.maca64/CAT_AddValuesToSurf
 D cat12/CAT.maca64/CAT_AverageSurfaces
 D cat12/CAT.maca64/CAT_BlurSurfHK
 D cat12/CAT.maca64/CAT_Central2Pial
 D cat12/CAT.maca64/CAT_DeformSurf
 D cat12/CAT.maca64/CAT_DumpCurv
 D cat12/CAT.maca64/CAT_DumpSurfArea
 D cat12/CAT.maca64/CAT_DumpSurfaceRatio
 D cat12/CAT.maca64/CAT_FixTopology
 D cat12/CAT.maca64/CAT_FractalDimension
 D cat12/CAT.maca64/CAT_Hausdorff
 D cat12/CAT.maca64/CAT_Isometize
 D cat12/CAT.maca64/CAT_MarchingCubesGenus0
 D cat12/CAT.maca64/CAT_MarkDefects
 D cat12/CAT.maca64/CAT_RefineMesh
 D cat12/CAT.maca64/CAT_ResampleSphericalSurf
 D cat12/CAT.maca64/CAT_ResampleSphericalSurfSPH
 D cat12/CAT.maca64/CAT_ResampleSurf
 D cat12/CAT.maca64/CAT_SelfIntersect
 D cat12/CAT.maca64/CAT_SeparatePolygon
 D cat12/CAT.maca64/CAT_SmoothConvexity
 D cat12/CAT.maca64/CAT_SulcusDepth
 D cat12/CAT.maca64/CAT_Surf2Sphere
 D cat12/CAT.maca64/CAT_SurfDistance
 D cat12/CAT.maca64/CAT_VolMarchingCubes
 D cat12/CAT.maca64/CAT_VolThicknessPbt
 D cat12/CAT.maca64/CAT_WarpSurf
 D cat12/CAT.maci64/CAT_3dVol2Surf
 D cat12/CAT.maci64/CAT_AddValuesToSurf
 D cat12/CAT.maci64/CAT_AverageSurfaces
 D cat12/CAT.maci64/CAT_BlurSurfHK
 D cat12/CAT.maci64/CAT_Central2Pial
 D cat12/CAT.maci64/CAT_DeformSurf
 D cat12/CAT.maci64/CAT_DumpCurv
 D cat12/CAT.maci64/CAT_DumpSurfArea
 D cat12/CAT.maci64/CAT_DumpSurfaceRatio
 D cat12/CAT.maci64/CAT_FixTopology
 D cat12/CAT.maci64/CAT_FractalDimension
 D cat12/CAT.maci64/CAT_Hausdorff
 D cat12/CAT.maci64/CAT_Isometize
 D cat12/CAT.maci64/CAT_MarchingCubesGenus0
 D cat12/CAT.maci64/CAT_MarkDefects
 D cat12/CAT.maci64/CAT_RefineMesh
 D cat12/CAT.maci64/CAT_ResampleSphericalSurf
 D cat12/CAT.maci64/CAT_ResampleSphericalSurfSPH
 D cat12/CAT.maci64/CAT_ResampleSurf
 D cat12/CAT.maci64/CAT_SelfIntersect
 D cat12/CAT.maci64/CAT_SeparatePolygon
 D cat12/CAT.maci64/CAT_SmoothConvexity
 D cat12/CAT.maci64/CAT_SulcusDepth
 D cat12/CAT.maci64/CAT_Surf2Sphere
 D cat12/CAT.maci64/CAT_SurfDistance
 D cat12/CAT.maci64/CAT_VolMarchingCubes
 D cat12/CAT.maci64/CAT_VolThicknessPbt
 D cat12/CAT.maci64/CAT_WarpSurf
 D cat12/CAT.w32/CAT_3dVol2Surf.exe
 D cat12/CAT.w32/CAT_AddValuesToSurf.exe
 D cat12/CAT.w32/CAT_AverageSurfaces.exe
 D cat12/CAT.w32/CAT_BlurSurfHK.exe
 D cat12/CAT.w32/CAT_Central2Pial.exe
 D cat12/CAT.w32/CAT_DeformSurf.exe
 D cat12/CAT.w32/CAT_DumpCurv.exe
 D cat12/CAT.w32/CAT_DumpSurfArea.exe
 D cat12/CAT.w32/CAT_DumpSurfaceRatio.exe
 D cat12/CAT.w32/CAT_FixTopology.exe
 D cat12/CAT.w32/CAT_FractalDimension.exe
 D cat12/CAT.w32/CAT_Hausdorff.exe
 D cat12/CAT.w32/CAT_Isometize.exe
 D cat12/CAT.w32/CAT_MarchingCubesGenus0.exe
 D cat12/CAT.w32/CAT_MarkDefects.exe
 D cat12/CAT.w32/CAT_RefineMesh.exe
 D cat12/CAT.w32/CAT_ResampleSphericalSurf.exe
 D cat12/CAT.w32/CAT_ResampleSphericalSurfSPH.exe
 D cat12/CAT.w32/CAT_ResampleSurf.exe
 D cat12/CAT.w32/CAT_SelfIntersect.exe
 D cat12/CAT.w32/CAT_SeparatePolygon.exe
 D cat12/CAT.w32/CAT_SmoothConvexity.exe
 D cat12/CAT.w32/CAT_SulcusDepth.exe
 D cat12/CAT.w32/CAT_Surf2Sphere.exe
 D cat12/CAT.w32/CAT_SurfDistance.exe
 D cat12/CAT.w32/CAT_VolMarchingCubes.exe
 D cat12/CAT.w32/CAT_WarpSurf.exe
 D cat12/CHANGES.txt
 D cat12/Contents.m
 D cat12/Kmeans.c
 D cat12/MrfPrior.c
 D cat12/Pve.c
 D cat12/README.md
 D cat12/atlases_surfaces/atlases_surfaces.man
 D cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot
 D cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot
 D cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot
 D cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot
 D cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot
 D cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot
 D cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot
 D cat12/atlases_surfaces/rh.Schaefer2018_100Parcels_17Networks_order.annot
 D cat12/atlases_surfaces/rh.Schaefer2018_200Parcels_17Networks_order.annot
 D cat12/atlases_surfaces/rh.Schaefer2018_400Parcels_17Networks_order.annot
 D cat12/atlases_surfaces/rh.Schaefer2018_600Parcels_17Networks_order.annot
 D cat12/atlases_surfaces/rh.aparc_DK40.freesurfer.annot
 D cat12/atlases_surfaces/rh.aparc_HCP_MMP1.freesurfer.annot
 D cat12/atlases_surfaces/rh.aparc_a2009s.freesurfer.annot
 D cat12/atlases_surfaces_32k/atlases_surfaces_32k.man
 D cat12/atlases_surfaces_32k/lh.Schaefer2018_100Parcels_17Networks_order.annot
 D cat12/atlases_surfaces_32k/lh.Schaefer2018_200Parcels_17Networks_order.annot
 D cat12/atlases_surfaces_32k/lh.Schaefer2018_400Parcels_17Networks_order.annot
 D cat12/atlases_surfaces_32k/lh.Schaefer2018_600Parcels_17Networks_order.annot
 D cat12/atlases_surfaces_32k/lh.aparc_DK40.freesurfer.annot
 D cat12/atlases_surfaces_32k/lh.aparc_HCP_MMP1.freesurfer.annot
 D cat12/atlases_surfaces_32k/lh.aparc_a2009s.freesurfer.annot
 D cat12/atlases_surfaces_32k/rh.Schaefer2018_100Parcels_17Networks_order.annot
 D cat12/atlases_surfaces_32k/rh.Schaefer2018_200Parcels_17Networks_order.annot
 D cat12/atlases_surfaces_32k/rh.Schaefer2018_400Parcels_17Networks_order.annot
 D cat12/atlases_surfaces_32k/rh.Schaefer2018_600Parcels_17Networks_order.annot
 D cat12/atlases_surfaces_32k/rh.aparc_DK40.freesurfer.annot
 D cat12/atlases_surfaces_32k/rh.aparc_HCP_MMP1.freesurfer.annot
 D cat12/atlases_surfaces_32k/rh.aparc_a2009s.freesurfer.annot
 D cat12/cat12.m
 D cat12/cat12.sh
 D cat12/cat_amap.c
 D cat12/cat_amap.m
 D cat12/cat_amap.mexa64
 D cat12/cat_amap.mexmaca64
 D cat12/cat_amap.mexmaci64
 D cat12/cat_amap.mexw64
 D cat12/cat_batch_bids.sh
 D cat12/cat_batch_cat.m
 D cat12/cat_batch_cat.sh
 D cat12/cat_batch_long.m
 D cat12/cat_batch_long.sh
 D cat12/cat_batch_spm.m
 D cat12/cat_batch_spm.sh
 D cat12/cat_check.m
 D cat12/cat_check_system_output.m
 D cat12/cat_conf_ROI.m
 D cat12/cat_conf_catsimple.m
 D cat12/cat_conf_extopts.m
 D cat12/cat_conf_factorial.m
 D cat12/cat_conf_long.m
 D cat12/cat_conf_nonlin_coreg.m
 D cat12/cat_conf_opts.m
 D cat12/cat_conf_output.m
 D cat12/cat_conf_stools.m
 D cat12/cat_conf_stoolsexp.m
 D cat12/cat_conf_tools.m
 D cat12/cat_debug.m
 D cat12/cat_defaults.m
 D cat12/cat_display_matlab_PID.m
 D cat12/cat_get_defaults.m
 D cat12/cat_install_atlases.m
 D cat12/cat_install_tfce.m
 D cat12/cat_io_FreeSurfer.m
 D cat12/cat_io_addwarning.m
 D cat12/cat_io_cgw2seg.m
 D cat12/cat_io_checkdepfiles.m
 D cat12/cat_io_checkinopt.m
 D cat12/cat_io_cmd.m
 D cat12/cat_io_colormaps.m
 D cat12/cat_io_contains.m
 D cat12/cat_io_cprintf.m
 D cat12/cat_io_csv.m
 D cat12/cat_io_data2mat.m
 D cat12/cat_io_file_move.m
 D cat12/cat_io_handle_pre.m
 D cat12/cat_io_img2nii.m
 D cat12/cat_io_lazy.m
 D cat12/cat_io_load.m
 D cat12/cat_io_matlabversion.m
 D cat12/cat_io_mergeStruct.m
 D cat12/cat_io_remat.m
 D cat12/cat_io_report.m
 D cat12/cat_io_rerun.m
 D cat12/cat_io_rmdir.m
 D cat12/cat_io_seg2cgw.m
 D cat12/cat_io_send_to_server.m
 D cat12/cat_io_senderrormail.m
 D cat12/cat_io_strrep.m
 D cat12/cat_io_struct2cell.m
 D cat12/cat_io_struct2table.m
 D cat12/cat_io_subfolders.m
 D cat12/cat_io_updateStruct.m
 D cat12/cat_io_volctype.m
 D cat12/cat_io_writenii.m
 D cat12/cat_io_xml.m
 D cat12/cat_io_xml2csv.m
 D cat12/cat_long_APP.m
 D cat12/cat_long_biascorr.m
 D cat12/cat_long_createTPM.m
 D cat12/cat_long_main.m
 D cat12/cat_long_multi_run.m
 D cat12/cat_long_report.m
 D cat12/cat_long_shoot_defaults.m
 D cat12/cat_main.m
 D cat12/cat_main1639.m
 D cat12/cat_main_APRG.m
 D cat12/cat_main_LAS.m
 D cat12/cat_main_LASs.m
 D cat12/cat_main_amap.m
 D cat12/cat_main_amap1639.m
 D cat12/cat_main_clean_gwc.m
 D cat12/cat_main_clean_gwc1639.m
 D cat12/cat_main_cleanup.m
 D cat12/cat_main_correctmyelination.m
 D cat12/cat_main_gcut.m
 D cat12/cat_main_gcut_DEV.m
 D cat12/cat_main_gintnorm.m
 D cat12/cat_main_gintnorm1639.m
 D cat12/cat_main_gintnormi.m
 D cat12/cat_main_registration.m
 D cat12/cat_main_report.m
 D cat12/cat_main_reportcmd.m
 D cat12/cat_main_reportfig.m
 D cat12/cat_main_reportstr.m
 D cat12/cat_main_roi.m
 D cat12/cat_main_updateSPM.m
 D cat12/cat_main_updateSPM1639.m
 D cat12/cat_main_updateWMHs.m
 D cat12/cat_main_update_intnorm.m
 D cat12/cat_main_write.m
 D cat12/cat_ornlm.c
 D cat12/cat_ornlm.m
 D cat12/cat_ornlm.mexa64
 D cat12/cat_ornlm.mexmaca64
 D cat12/cat_ornlm.mexmaci
 D cat12/cat_ornlm.mexmaci64
 D cat12/cat_ornlm.mexw64
 D cat12/cat_parallelize.m
 D cat12/cat_plot_boxplot.m
 D cat12/cat_plot_circular.m
 D cat12/cat_plot_cov.m
 D cat12/cat_plot_glassbrain.m
 D cat12/cat_plot_histogram.m
 D cat12/cat_plot_scatter.m
 D cat12/cat_progress_bar.m
 D cat12/cat_roi_fun.m
 D cat12/cat_roi_roi2surf.m
 D cat12/cat_roi_values2surf.m
 D cat12/cat_run.m
 D cat12/cat_run_job.m
 D cat12/cat_run_job1639.m
 D cat12/cat_run_job_APP_SPMinit.m
 D cat12/cat_run_job_APP_init.m
 D cat12/cat_run_job_APP_init1070.m
 D cat12/cat_run_job_APRGs.m
 D cat12/cat_run_newcatch.m
 D cat12/cat_sanlm.c
 D cat12/cat_sanlm.m
 D cat12/cat_sanlm.mexa64
 D cat12/cat_sanlm.mexmaca64
 D cat12/cat_sanlm.mexmaci64
 D cat12/cat_sanlm.mexw64
 D cat12/cat_simple.m
 D cat12/cat_spm_affreg.m
 D cat12/cat_spm_preproc8.m
 D cat12/cat_spm_preproc_run.m
 D cat12/cat_spm_preproc_write8.m
 D cat12/cat_spm_results_ui.m
 D cat12/cat_spm_shoot_template.m
 D cat12/cat_spm_smoothto8bit.m
 D cat12/cat_stat_IQR.m
 D cat12/cat_stat_TIV.m
 D cat12/cat_stat_analyze_ROIs.m
 D cat12/cat_stat_calc_stc.m
 D cat12/cat_stat_check_SPM.m
 D cat12/cat_stat_check_cov_old.m
 D cat12/cat_stat_confplot_spm.m
 D cat12/cat_stat_cva_ui.m
 D cat12/cat_stat_diff.m
 D cat12/cat_stat_getCSVXMLfield.m
 D cat12/cat_stat_histth.m
 D cat12/cat_stat_homogeneity.m
 D cat12/cat_stat_kmeans.m
 D cat12/cat_stat_marks.m
 D cat12/cat_stat_nanmean.m
 D cat12/cat_stat_nanmedian.m
 D cat12/cat_stat_nanstat1d.m
 D cat12/cat_stat_nanstd.m
 D cat12/cat_stat_nansum.m
 D cat12/cat_stat_orth_nuisance.m
 D cat12/cat_stat_polynomial.m
 D cat12/cat_stat_quality_measures.m
 D cat12/cat_stat_showslice_all.m
 D cat12/cat_stat_spm.m
 D cat12/cat_stat_spm2x.m
 D cat12/cat_surf_GI3D.m
 D cat12/cat_surf_avg.m
 D cat12/cat_surf_calc.m
 D cat12/cat_surf_coregvol2surf.m
 D cat12/cat_surf_createCS.m
 D cat12/cat_surf_createCS2.m
 D cat12/cat_surf_createCS3.m
 D cat12/cat_surf_createCS3_test.m
 D cat12/cat_surf_create_TPM_hull_surface.m
 D cat12/cat_surf_display.m
 D cat12/cat_surf_epivolsurf.m
 D cat12/cat_surf_flipsides.m
 D cat12/cat_surf_flipvalues.m
 D cat12/cat_surf_fun.m
 D cat12/cat_surf_gyrification.m
 D cat12/cat_surf_info.m
 D cat12/cat_surf_laterality_index.m
 D cat12/cat_surf_load.m
 D cat12/cat_surf_map_atlas.m
 D cat12/cat_surf_max.m
 D cat12/cat_surf_parameters.m
 D cat12/cat_surf_rename.m
 D cat12/cat_surf_render.m
 D cat12/cat_surf_render2.m
 D cat12/cat_surf_renderv.m
 D cat12/cat_surf_resamp.m
 D cat12/cat_surf_resamp_freesurfer.m
 D cat12/cat_surf_results.m
 D cat12/cat_surf_scaling.m
 D cat12/cat_surf_smooth.m
 D cat12/cat_surf_surf2roi.m
 D cat12/cat_surf_vol2surf.m
 D cat12/cat_surf_vx2surf.m
 D cat12/cat_system.m
 D cat12/cat_tst_BWPsliceartifact.m
 D cat12/cat_tst_CJV.m
 D cat12/cat_tst_calc_kappa.m
 D cat12/cat_tst_cattest.m
 D cat12/cat_tst_qa_cleaner.m
 D cat12/cat_tst_qa_normer.m
 D cat12/cat_tst_staple_multilabels.m
 D cat12/cat_update.m
 D cat12/cat_vbdist.c
 D cat12/cat_vbdist.m
 D cat12/cat_vbdist.mexa64
 D cat12/cat_vbdist.mexmaca64
 D cat12/cat_vbdist.mexmaci64
 D cat12/cat_vbdist.mexw64
 D cat12/cat_version.m
 D cat12/cat_vol_ROI_summarize.m
 D cat12/cat_vol_ROIval.c
 D cat12/cat_vol_ROIval.m
 D cat12/cat_vol_ROIval.mexmaci64
 D cat12/cat_vol_addtruecolourimage.m
 D cat12/cat_vol_approx.m
 D cat12/cat_vol_avg.m
 D cat12/cat_vol_correct_slice_scaling.m
 D cat12/cat_vol_createMPM.m
 D cat12/cat_vol_createTPM.m
 D cat12/cat_vol_ctype.m
 D cat12/cat_vol_defs.m
 D cat12/cat_vol_display_label.m
 D cat12/cat_vol_div.m
 D cat12/cat_vol_downcut.c
 D cat12/cat_vol_downcut.m
 D cat12/cat_vol_downcut.mexa64
 D cat12/cat_vol_downcut.mexmaca64
 D cat12/cat_vol_downcut.mexmaci64
 D cat12/cat_vol_downcut.mexw64
 D cat12/cat_vol_eidist.c
 D cat12/cat_vol_eidist.m
 D cat12/cat_vol_eidist.mexa64
 D cat12/cat_vol_eidist.mexmaca64
 D cat12/cat_vol_eidist.mexmaci64
 D cat12/cat_vol_eidist.mexw64
 D cat12/cat_vol_eikonal3.mexa64
 D cat12/cat_vol_eikonal3.mexmaci64
 D cat12/cat_vol_eikonal3.mexw64
 D cat12/cat_vol_findfiles.m
 D cat12/cat_vol_genus0.c
 D cat12/cat_vol_genus0.m
 D cat12/cat_vol_genus0.mexa64
 D cat12/cat_vol_genus0.mexmaca64
 D cat12/cat_vol_genus0.mexmaci64
 D cat12/cat_vol_genus0.mexw64
 D cat12/cat_vol_glassbrain.m
 D cat12/cat_vol_grad.m
 D cat12/cat_vol_gradient3.c
 D cat12/cat_vol_gradient3.mexa64
 D cat12/cat_vol_gradient3.mexmaca64
 D cat12/cat_vol_gradient3.mexmaci64
 D cat12/cat_vol_gradient3.mexw64
 D cat12/cat_vol_groupwise_ls.m
 D cat12/cat_vol_headtrimming.m
 D cat12/cat_vol_imcalc.m
 D cat12/cat_vol_img2mip.m
 D cat12/cat_vol_inpaint.m
 D cat12/cat_vol_interp3f.cpp
 D cat12/cat_vol_interp3f.m
 D cat12/cat_vol_interp3f.mexa64
 D cat12/cat_vol_interp3f.mexmaca64
 D cat12/cat_vol_interp3f.mexmaci64
 D cat12/cat_vol_interp3f.mexw64
 D cat12/cat_vol_iscale.m
 D cat12/cat_vol_iscaling.m
 D cat12/cat_vol_laplace3.c
 D cat12/cat_vol_laplace3.m
 D cat12/cat_vol_laplace3.mexa64
 D cat12/cat_vol_laplace3.mexmaca64
 D cat12/cat_vol_laplace3.mexmaci64
 D cat12/cat_vol_laplace3.mexw64
 D cat12/cat_vol_laplace3R.c
 D cat12/cat_vol_laplace3R.m
 D cat12/cat_vol_laplace3R.mexa64
 D cat12/cat_vol_laplace3R.mexmaca64
 D cat12/cat_vol_laplace3R.mexmaci64
 D cat12/cat_vol_laplace3R.mexw64
 D cat12/cat_vol_laterality_index.m
 D cat12/cat_vol_localstat.c
 D cat12/cat_vol_localstat.m
 D cat12/cat_vol_localstat.mexa64
 D cat12/cat_vol_localstat.mexmaca64
 D cat12/cat_vol_localstat.mexmaci64
 D cat12/cat_vol_localstat.mexw64
 D cat12/cat_vol_maskimage.m
 D cat12/cat_vol_median3.c
 D cat12/cat_vol_median3.m
 D cat12/cat_vol_median3.mexa64
 D cat12/cat_vol_median3.mexmaca64
 D cat12/cat_vol_median3.mexmaci64
 D cat12/cat_vol_median3.mexw64
 D cat12/cat_vol_median3c.c
 D cat12/cat_vol_median3c.m
 D cat12/cat_vol_median3c.mexa64
 D cat12/cat_vol_median3c.mexmaca64
 D cat12/cat_vol_median3c.mexmaci64
 D cat12/cat_vol_median3c.mexw64
 D cat12/cat_vol_mimcalc.m
 D cat12/cat_vol_morph.m
 D cat12/cat_vol_mp2rage.m
 D cat12/cat_vol_nanmean3.m
 D cat12/cat_vol_nonlin_coreg.m
 D cat12/cat_vol_nonlin_coreg_multi_run.m
 D cat12/cat_vol_partvol.m
 D cat12/cat_vol_partvol1639.m
 D cat12/cat_vol_pbt.m
 D cat12/cat_vol_pbtp.c
 D cat12/cat_vol_pbtp.cpp
 D cat12/cat_vol_pbtp.m
 D cat12/cat_vol_pbtp.mexa64
 D cat12/cat_vol_pbtp.mexmaca64
 D cat12/cat_vol_pbtp.mexmaci64
 D cat12/cat_vol_pbtp.mexw64
 D cat12/cat_vol_pbtsimple.m
 D cat12/cat_vol_pbtv.cpp
 D cat12/cat_vol_pbtv.mexmaci64
 D cat12/cat_vol_qa.m
 D cat12/cat_vol_qa201602.m
 D cat12/cat_vol_qa201901.m
 D cat12/cat_vol_qa201901x.m
 D cat12/cat_vol_qa202110.m
 D cat12/cat_vol_qa202110x.m
 D cat12/cat_vol_qa202205.m
 D cat12/cat_vol_qa202207b.m
 D cat12/cat_vol_qa202310.m
 D cat12/cat_vol_reduceRes.m
 D cat12/cat_vol_resize.m
 D cat12/cat_vol_sample.m
 D cat12/cat_vol_sanlm.m
 D cat12/cat_vol_sanlm2.m
 D cat12/cat_vol_sanlm2180.m
 D cat12/cat_vol_series_align.m
 D cat12/cat_vol_set_com.m
 D cat12/cat_vol_simgrow.c
 D cat12/cat_vol_simgrow.m
 D cat12/cat_vol_simgrow.mexa64
 D cat12/cat_vol_simgrow.mexmaca64
 D cat12/cat_vol_simgrow.mexmaci64
 D cat12/cat_vol_simgrow.mexw64
 D cat12/cat_vol_slice_overlay.m
 D cat12/cat_vol_slice_overlay_rgb_ui.m
 D cat12/cat_vol_slice_overlay_ui.m
 D cat12/cat_vol_smooth3X.m
 D cat12/cat_vol_testflipping.m
 D cat12/cat_vol_tfce.m
 D cat12/cat_vol_urqio.m
 D cat12/compile.m
 D cat12/distribute_to_server.sh
 D cat12/doc/cat.html
 D cat12/doc/cat.txt
 D cat12/doc/css/cat.css
 D cat12/doc/css/fontawesome-all.min.css
 D cat12/doc/css/main.css
 D cat12/doc/disclaimer.html
 D cat12/doc/icons/file_cat_log.png
 D cat12/doc/icons/file_cat_report.png
 D cat12/doc/icons/file_cat_report_surf.png
 D cat12/doc/icons/file_cat_reportlong.png
 D cat12/doc/icons/file_cat_xml.png
 D cat12/doc/icons/file_delete.png
 D cat12/doc/icons/file_delete_restore.png
 D cat12/doc/icons/file_export.png
 D cat12/doc/icons/file_new.png
 D cat12/doc/icons/file_open.png
 D cat12/doc/icons/file_pdf.png
 D cat12/doc/icons/file_print.png
 D cat12/doc/icons/file_save.png
 D cat12/doc/icons/file_search.png
 D cat12/doc/icons/file_spm_view.png
 D cat12/doc/icons/file_spm_view_p0.png
 D cat12/doc/icons/file_surf.png
 D cat12/doc/icons/file_surfc.png
 D cat12/doc/icons/greenarrowicon.png
 D cat12/doc/icons/list_del.png
 D cat12/doc/icons/list_new.png
 D cat12/doc/icons/redo.png
 D cat12/doc/icons/refresh.png
 D cat12/doc/icons/settings.png
 D cat12/doc/icons/status_failed.old.png
 D cat12/doc/icons/status_failed.png
 D cat12/doc/icons/status_forbiden.png
 D cat12/doc/icons/status_help.png
 D cat12/doc/icons/status_help2.png
 D cat12/doc/icons/status_info.png
 D cat12/doc/icons/status_passed.png
 D cat12/doc/icons/status_warning_hard.png
 D cat12/doc/icons/status_warning_soft.png
 D cat12/doc/icons/tool_data_cursor.png
 D cat12/doc/icons/tool_fit.png
 D cat12/doc/icons/tool_hand.png
 D cat12/doc/icons/tool_pointer.png
 D cat12/doc/icons/tool_zoom_in.png
 D cat12/doc/icons/tool_zoom_out.png
 D cat12/doc/icons/trash_auto.png
 D cat12/doc/icons/trash_col_add.png
 D cat12/doc/icons/trash_col_rm.png
 D cat12/doc/icons/trash_row_add.png
 D cat12/doc/icons/trash_row_rm.png
 D cat12/doc/icons/trash_tip_add.png
 D cat12/doc/icons/trash_tip_rm.png
 D cat12/doc/icons/undo.png
 D cat12/doc/images/CAT.png
 D cat12/doc/images/CAT_Error_Report.jpg
 D cat12/doc/images/CAT_PBT_for_SPM.png
 D cat12/doc/images/CAT_Poster.jpg
 D cat12/doc/images/CAT_Report.jpg
 D cat12/doc/images/CAT_surf_atlas_DKT40.png
 D cat12/doc/images/CAT_surf_atlas_Desikan-Killiany.png
 D cat12/doc/images/CAT_surf_atlas_Destrieux.png
 D cat12/doc/images/CAT_surf_atlas_PALS-B12-Brodmann.png
 D cat12/doc/images/CAT_surf_atlas_PALS-B12-Lobes.png
 D cat12/doc/images/CAT_surf_atlas_aal.png
 D cat12/doc/images/CAT_surf_atlas_hammers.png
 D cat12/doc/images/CAT_surf_atlas_lpba40.png
 D cat12/doc/images/CAT_surf_atlas_mori.png
 D cat12/doc/images/CAT_surf_atlas_neuromorphometrics.png
 D cat12/doc/images/Gyral_blurring.png
 D cat12/doc/images/Problems_in_7_Tesla.png
 D cat12/doc/images/Sulcal_blurring.png
 D cat12/doc/images/analyse_methods.png
 D cat12/doc/images/background_biasreal.png
 D cat12/doc/images/background_morphops.png
 D cat12/doc/images/background_noise.png
 D cat12/doc/images/batch_gui.jpg
 D cat12/doc/images/cat_SLC_msk_c0009s0010t01A.png
 D cat12/doc/images/cat_bg.jpg
 D cat12/doc/images/cat_extract_addition_surface_parameter.png
 D cat12/doc/images/cat_gui.png
 D cat12/doc/images/cat_hd02.png
 D cat12/doc/images/cat_hd02blue.png
 D cat12/doc/images/cat_hd02blue2.png
 D cat12/doc/images/cat_hd02cyan.png
 D cat12/doc/images/cat_hd02green.png
 D cat12/doc/images/cat_hd02orange.png
 D cat12/doc/images/cat_hd02purple.png
 D cat12/doc/images/cat_hd02red.png
 D cat12/doc/images/cat_hd02yellow.png
 D cat12/doc/images/cat_logo.png
 D cat12/doc/images/cat_long_pipeline.png
 D cat12/doc/images/cat_long_pipelines.png
 D cat12/doc/images/cat_long_report_plasticity-aging_ADNI011S0003.jpg
 D cat12/doc/images/cat_long_report_scannerdifferences_ADNI002S0559.jpg
 D cat12/doc/images/cat_methods_catsimple.png
 D cat12/doc/images/cat_methods_downsampling.jpg
 D cat12/doc/images/cat_methods_postmortem.jpg
 D cat12/doc/images/cat_processing_pipeline.png
 D cat12/doc/images/cat_processing_steps.png
 D cat12/doc/images/cat_qa_expert.png
 D cat12/doc/images/cat_qa_rating-distribution.png
 D cat12/doc/images/cat_qa_rating-table.jpg
 D cat12/doc/images/cat_stat_checkcov_00_overview.png
 D cat12/doc/images/cat_stat_checkcov_01_batch.png
 D cat12/doc/images/cat_stat_checkcov_02_command.png
 D cat12/doc/images/cat_stat_checkcov_03_checkcov.png
 D cat12/doc/images/cat_stat_checkcov_04_boxplot01_MNC.png
 D cat12/doc/images/cat_stat_checkcov_04_boxplot02_IQR.png
 D cat12/doc/images/cat_stat_checkcov_05_check_01_original.png
 D cat12/doc/images/cat_stat_checkcov_07_exclusion.png
 D cat12/doc/images/cat_surf_vx2surf_evalGM.png
 D cat12/doc/images/cat_surf_vx2surf_smoothing.png
 D cat12/doc/images/cat_surf_vx2surf_vol-int-dist.png
 D cat12/doc/images/cat_tst_reg_boxplot.png
 D cat12/doc/images/cat_tst_seg_BWP_boxplot.png
 D cat12/doc/images/cat_tst_seg_BWP_detail.png
 D cat12/doc/images/cat_tst_seg_bwp_ana.png
 D cat12/doc/images/cat_tst_seg_bwp_boxplot_para.png
 D cat12/doc/images/cat_tst_seg_bwp_boxplot_para_CAT.png
 D cat12/doc/images/cat_tst_seg_bwp_boxplot_para_SPM.png
 D cat12/doc/images/cat_tst_seg_bwp_detail_para.png
 D cat12/doc/images/cat_tst_seg_exp_boxplot.png
 D cat12/doc/images/cat_tst_seg_exp_boxplot_para_CAT.png
 D cat12/doc/images/cat_tst_seg_exp_boxplot_para_SPM.png
 D cat12/doc/images/cat_tst_seg_exp_boxplot_para_WMH.png
 D cat12/doc/images/cat_tst_seg_exp_detail.png
 D cat12/doc/images/cat_tst_seg_exp_detail_para.png
 D cat12/doc/images/cat_tst_seg_ibsr_boxplot.png
 D cat12/doc/images/cat_tst_seg_ibsr_detail.png
 D cat12/doc/images/cat_tst_seg_sve_boxplot.png
 D cat12/doc/images/cat_tst_seg_sve_detail.png
 D cat12/doc/images/cat_vol_correct_slice_scaling_768.png
 D cat12/doc/images/catlongreportj_mwp1r.jpg
 D cat12/doc/images/catreport_Collins.jpg
 D cat12/doc/images/catreportj_OAS1_0031_MR1_mpr_n4_anon_sbj_111_WMHC0.jpg
 D cat12/doc/images/catreportj_OAS1_0031_MR1_mpr_n4_anon_sbj_111_WMHC1.jpg
 D cat12/doc/images/catreportj_OAS1_0031_MR1_mpr_n4_anon_sbj_111_WMHC2.jpg
 D cat12/doc/images/catreportj_OAS1_0031_MR1_mpr_n4_anon_sbj_111_WMHC3.jpg
 D cat12/doc/images/contact.jpg
 D cat12/doc/images/contact_small.jpg
 D cat12/doc/images/cortical_measures.png
 D cat12/doc/images/gyrification_index.png
 D cat12/doc/images/home.jpg
 D cat12/doc/images/human_brain.png
 D cat12/doc/images/images.jpg
 D cat12/doc/images/model_2sample.png
 D cat12/doc/images/model_anova2x2.png
 D cat12/doc/images/model_interact.png
 D cat12/doc/images/model_interact_poly.png
 D cat12/doc/images/model_long1.png
 D cat12/doc/images/model_long2.png
 D cat12/doc/images/model_long_cov.png
 D cat12/doc/images/model_mult_reg.png
 D cat12/doc/images/model_mult_reg2.png
 D cat12/doc/images/neonates.png
 D cat12/doc/images/non_orthogonal.png
 D cat12/doc/images/ortho.png
 D cat12/doc/images/people.jpg
 D cat12/doc/images/preprocessing.png
 D cat12/doc/images/research.jpg
 D cat12/doc/images/spm_gui.png
 D cat12/doc/images/vbm.jpg
 D cat12/doc/index.html
 D cat12/doc/js/breakpoints.min.js
 D cat12/doc/js/browser.min.js
 D cat12/doc/js/jquery.min.js
 D cat12/doc/js/main.js
 D cat12/doc/js/util.js
 D cat12/doc/webfonts/fa-brands-400.eot
 D cat12/doc/webfonts/fa-brands-400.svg
 D cat12/doc/webfonts/fa-brands-400.ttf
 D cat12/doc/webfonts/fa-brands-400.woff
 D cat12/doc/webfonts/fa-brands-400.woff2
 D cat12/doc/webfonts/fa-regular-400.eot
 D cat12/doc/webfonts/fa-regular-400.svg
 D cat12/doc/webfonts/fa-regular-400.ttf
 D cat12/doc/webfonts/fa-regular-400.woff
 D cat12/doc/webfonts/fa-regular-400.woff2
 D cat12/doc/webfonts/fa-solid-900.eot
 D cat12/doc/webfonts/fa-solid-900.svg
 D cat12/doc/webfonts/fa-solid-900.ttf
 D cat12/doc/webfonts/fa-solid-900.woff
 D cat12/doc/webfonts/fa-solid-900.woff2
 D cat12/genus0.c
 D cat12/genus0.h
 D cat12/glass_brain.mat
 D cat12/ornlm_float.c
 D cat12/sanlm_float.c
 D cat12/slice_overlay.m
 D cat12/sliderPanel.m
 D cat12/spm_cat12.m
 D cat12/spm_diffeo.mexa64
 D cat12/spm_diffeo.mexmaca64
 D cat12/spm_diffeo.mexmaci64
 D cat12/spm_diffeo.mexw32
 D cat12/spm_diffeo.mexw64
 D cat12/standalone/cat_parallelize.sh
 D cat12/standalone/cat_standalone.sh
 D cat12/standalone/cat_standalone_deface.m
 D cat12/standalone/cat_standalone_dicom2nii.m
 D cat12/standalone/cat_standalone_get_IQR.m
 D cat12/standalone/cat_standalone_get_ROI_values.m
 D cat12/standalone/cat_standalone_get_TIV.m
 D cat12/standalone/cat_standalone_get_quality.m
 D cat12/standalone/cat_standalone_resample.m
 D cat12/standalone/cat_standalone_segment.m
 D cat12/standalone/cat_standalone_segment_enigma.m
 D cat12/standalone/cat_standalone_segment_long.m
 D cat12/standalone/cat_standalone_simple.m
 D cat12/standalone/cat_standalone_smooth.m
 D cat12/standalone/cat_standalone_tfce.m
 D cat12/tbx_cfg_cat.m
 D cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.csv
 D cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.csv
 D cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.csv
 D cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.csv
 D cat12/templates_MNI152NLin2009cAsym/Tian_Subcortex_S4_7T.csv
 D cat12/templates_MNI152NLin2009cAsym/Tian_Subcortex_S4_7T.txt
 D cat12/templates_MNI152NLin2009cAsym/aal3.csv
 D cat12/templates_MNI152NLin2009cAsym/aal3.txt
 D cat12/templates_MNI152NLin2009cAsym/anatomy3.csv
 D cat12/templates_MNI152NLin2009cAsym/anatomy3.txt
 D cat12/templates_MNI152NLin2009cAsym/cobra.csv
 D cat12/templates_MNI152NLin2009cAsym/cobra.txt
 D cat12/templates_MNI152NLin2009cAsym/hammers.csv
 D cat12/templates_MNI152NLin2009cAsym/hammers.txt
 D cat12/templates_MNI152NLin2009cAsym/ibsr.csv
 D cat12/templates_MNI152NLin2009cAsym/ibsr.txt
 D cat12/templates_MNI152NLin2009cAsym/julichbrain.csv
 D cat12/templates_MNI152NLin2009cAsym/julichbrain.txt
 D cat12/templates_MNI152NLin2009cAsym/lpba40.csv
 D cat12/templates_MNI152NLin2009cAsym/lpba40.txt
 D cat12/templates_MNI152NLin2009cAsym/mori.csv
 D cat12/templates_MNI152NLin2009cAsym/mori.txt
 D cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.csv
 D cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.txt
 D cat12/templates_MNI152NLin2009cAsym/schaefer.txt
 D cat12/templates_MNI152NLin2009cAsym/suit.csv
 D cat12/templates_MNI152NLin2009cAsym/suit.txt
 D cat12/templates_MNI152NLin2009cAsym/templates.man
 D cat12/templates_MNI152NLin2009cAsym/thalamic_nuclei.csv
 D cat12/templates_MNI152NLin2009cAsym/thalamic_nuclei.txt
 D cat12/templates_MNI152NLin2009cAsym/thalamus.csv
 D cat12/templates_MNI152NLin2009cAsym/thalamus.txt
 D cat12/templates_surfaces/bh.headbrain.TPM.gii
 D cat12/templates_surfaces/cb.central.Template_T1.gii
 D cat12/templates_surfaces/cb.central.freesurfer.gii
 D cat12/templates_surfaces/cb.sphere.freesurfer.gii
 D cat12/templates_surfaces/cb.thickness.Template_T1
 D cat12/templates_surfaces/fsavg.index2D_256x128.txt
 D cat12/templates_surfaces/lh.central.Template_T1.gii
 D cat12/templates_surfaces/lh.central.freesurfer.gii
 D cat12/templates_surfaces/lh.inflated.freesurfer.gii
 D cat12/templates_surfaces/lh.mask
 D cat12/templates_surfaces/lh.mc.freesurfer.gii
 D cat12/templates_surfaces/lh.patch.freesurfer.gii
 D cat12/templates_surfaces/lh.sphere.freesurfer.gii
 D cat12/templates_surfaces/lh.sqrtsulc.freesurfer.gii
 D cat12/templates_surfaces/lh.thickness.Template_T1
 D cat12/templates_surfaces/mesh.central.Template_T1.gii
 D cat12/templates_surfaces/mesh.central.freesurfer.gii
 D cat12/templates_surfaces/mesh.inflated.freesurfer.gii
 D cat12/templates_surfaces/rh.central.Template_T1.gii
 D cat12/templates_surfaces/rh.central.freesurfer.gii
 D cat12/templates_surfaces/rh.inflated.freesurfer.gii
 D cat12/templates_surfaces/rh.mask
 D cat12/templates_surfaces/rh.mc.freesurfer.gii
 D cat12/templates_surfaces/rh.patch.freesurfer.gii
 D cat12/templates_surfaces/rh.sphere.freesurfer.gii
 D cat12/templates_surfaces/rh.sqrtsulc.freesurfer.gii
 D cat12/templates_surfaces/rh.thickness.Template_T1
 D cat12/templates_surfaces/templates_surfaces.man
 D cat12/templates_surfaces_32k/fsavg.index2D_256x128.txt
 D cat12/templates_surfaces_32k/lh.central.Template_T1.gii
 D cat12/templates_surfaces_32k/lh.central.freesurfer.gii
 D cat12/templates_surfaces_32k/lh.inflated.freesurfer.gii
 D cat12/templates_surfaces_32k/lh.mask
 D cat12/templates_surfaces_32k/lh.mc.freesurfer.gii
 D cat12/templates_surfaces_32k/lh.patch.freesurfer.gii
 D cat12/templates_surfaces_32k/lh.sphere.freesurfer.gii
 D cat12/templates_surfaces_32k/lh.sqrtsulc.freesurfer.gii
 D cat12/templates_surfaces_32k/lh.thickness.Template_T1
 D cat12/templates_surfaces_32k/mesh.central.Template_T1.gii
 D cat12/templates_surfaces_32k/mesh.central.freesurfer.gii
 D cat12/templates_surfaces_32k/mesh.inflated.freesurfer.gii
 D cat12/templates_surfaces_32k/rh.central.Template_T1.gii
 D cat12/templates_surfaces_32k/rh.central.freesurfer.gii
 D cat12/templates_surfaces_32k/rh.inflated.freesurfer.gii
 D cat12/templates_surfaces_32k/rh.mask
 D cat12/templates_surfaces_32k/rh.mc.freesurfer.gii
 D cat12/templates_surfaces_32k/rh.patch.freesurfer.gii
 D cat12/templates_surfaces_32k/rh.sphere.freesurfer.gii
 D cat12/templates_surfaces_32k/rh.sqrtsulc.freesurfer.gii
 D cat12/templates_surfaces_32k/rh.thickness.Template_T1
 D cat12/templates_surfaces_32k/templates_surfaces_32k.man
 D cat12/tfceMex_pthread.c
 D cat12/tfceMex_pthread.m
 D cat12/tfceMex_pthread.mexa64
 D cat12/tfceMex_pthread.mexmaca64
 D cat12/tfceMex_pthread.mexmaci64
 D cat12/tfceMex_pthread.mexw64
 D cat12/tricases.h
 D cat12/vollib.c
 M doc/cat.html
  • Loading branch information
ChristianGaser committed Mar 8, 2024
1 parent 926d408 commit cf980e3
Show file tree
Hide file tree
Showing 809 changed files with 821 additions and 275,977 deletions.
819 changes: 819 additions & 0 deletions CHANGES.txt

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion Contents.m
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
% Computational Anatomy Toolbox
% Version 2559 (CAT12.9) 2024-03-02
% Version 2560 (CAT12.9) 2024-03-08
% ______________________________________________________________________
%
% Christian Gaser, Robert Dahnke
Expand Down
Loading

0 comments on commit cf980e3

Please sign in to comment.