This is the code repository to reproduce all major figures in our paper:
- L. Kronstad, C. Seiler, R. Vergara, S. Holmes, and C. Blish
Differential Induction of IFN-α and Modulation of CD112 and CD54 Expression Govern the Magnitude of NK Cell IFN-γ Response to Influenza A Viruses
The Journal of Immunology, 2018
make install
Using STAR.
make mapping
Using tophat.
make indexing
make mapping_tophat
This will run two R markdown files: DESeq2.Rmd and NetworkAnalysis.Rmd.
make da_monocyte
make da_nk