update docs

README.md

@@ -25,9 +25,7 @@ This repository is under active development. Feedback, issues, and PRs are highl
 appreciated. Your input is valuable as it helps us persuade our business guys to support
 open source.
 
-## Installation
-
-### Manual installation
+## Setting up
 
 - Clone the repo
 
@@ -68,21 +66,3 @@ open source.
   ```shell
   pytest tests
   ```
-
-### From installation scripts
-
-1. Clone the repository.
-2. Navigate to the `scripts` folder and start an installer that matches your OS:
-   - Linux: `run_linux.sh`
-   - Windows: `run_windows.bat`
-   - macOS: `run_macos.sh`
-3. After the installation, the installer will ask to launch the ktem's UI,answer to continue.
-4. If launched, the application will be available at `http://localhost:7860/`.
-5. The conda environment is located in the `install_dir/env` folder.
-
-Here is the setup and update strategy:
-
-- **Run the `run_*` script**: This setup environment, including downloading Miniconda (in case Conda is not available in your machine) and installing necessary dependencies in `install_dir` folder.
-- **Launch the UI**: To launch the ktem's UI after initial setup or any changes, simply run `run_*` script again.
-- **Reinstall dependencies**: Simply delete the `install_dir/env` folder and run `run_*`
-  script again. The script will recreate the folder with fresh dependencies.

docs/development/contributing.md

@@ -9,13 +9,13 @@
   like Langchain, llama-index,... when possible) commonly used components in
   kotaemon use cases. Some of these components are: LLM, vector store,
   document store, retriever... For a detailed list and description of these
-  components, please refer to the [API Reference](/reference/nav/) section.
+  components, please refer to the [API Reference](../reference/Summary.md) section.
 - List of utilities: `kotaemon` provides utilities and tools that are
   usually needed in client project. For example, it provides a prompt
   engineering UI for AI developers in a project to quickly create a prompt
   engineering tool for DMs and QALs. It also provides a command to quickly spin
   up a project code base. For a full list and description of these utilities,
-  please refer to the [Utilities](/development/utilities) section.
+  please refer to the [Utilities](utilities.md) section.
 
 ```mermaid
 mindmap

docs/index.md

@@ -1,6 +1,8 @@
 # Getting Started with Kotaemon
 
-This page is intended for end users who want to use the `kotaemon` tool for Question Answering on local documents.
+This page is intended for end users who want to use the `kotaemon` tool for Question
+Answering on local documents. If you are a developer who wants contribute to the
+project, please visit the [development](development/index.md) page.
 
 ## Download
 
@@ -31,9 +33,9 @@ A browser window will be opened and greet you with this screen:
 
 ## Usage
 
-For how to use the application, see [Usage](/usage). This page will also be available to
+For how to use the application, see [Usage](usage.md). This page will also be available to
 you within the application.
 
 ## Feedback
 
-Feel free to create a bug report or a feature request or join a discussion at https://github.com/Cinnamon/kotaemon/issues.
+Feel free to create a bug report or a feature request on our [repo](https://github.com/Cinnamon/kotaemon/issues).

docs/scripts/generate_reference_docs.py

@@ -68,7 +68,7 @@ def generate_docs_for_src_code(
             full_doc_path, Path("..") / path.relative_to(code_dir.parent)
         )
 
-    with mkdocs_gen_files.open(f"{target_doc_folder}/NAV.md", "w") as nav_file:
+    with mkdocs_gen_files.open(f"{target_doc_folder}/Summary.md", "w") as nav_file:
         nav_file.writelines(nav.build_literate_nav())
 
 

docs/usage.md

@@ -14,18 +14,19 @@
 To add a model:
 
 1. Navigate to the `Resources` tab.
-2. Select `LLM Management`.
-3. Select `Add`.
+2. Select the `LLMs` sub-tab.
+3. Select the `Add` sub-tab.
 4. Config the model to add:
    - Give it a name.
    - Pick a vendor/provider (e.g. `ChatOpenAI`).
    - Provide the specifications.
-   - Optionally, set the model as default.
-5. Click `Add LLM`.
+   - (Optional) Set the model as default.
+5. Click `Add` to add the model.
+6. Select `Embedding Models` sub-tab and repeat the step 3 to 5 to add an embedding model.
 
-<details close>
+<details markdown>
 
-<summary>Configures model via the .env file</summary>
+<summary>(Optional) Configure model via the .env file</summary>
 
 Alternatively, you can configure the models via the `.env` file with the information needed to connect to the LLMs. This file is located in
 the folder of the application. If you don't see it, you can create one.
@@ -104,7 +105,7 @@ Here is how to get the full path of your model file:
 - On Windows 11: right click the file and select `Copy as Path`.
 </details>
 
-## Upload your documents
+## 2. Upload your documents
 
 ![file index tab](https://raw.githubusercontent.com/Cinnamon/kotaemon/main/docs/images/file-index-tab.png)
 
@@ -118,7 +119,7 @@ Navigate to the `File Index` tab and you will see 2 sections:
 2. File list:
    - This section shows the list of files that have been uploaded to the application and allows users to delete them.
 
-## Chat with your documents
+## 3. Chat with your documents
 
 ![chat tab](https://raw.githubusercontent.com/Cinnamon/kotaemon/main/docs/images/chat-tab.png)
 

mkdocs.yml

@@ -7,29 +7,31 @@ nav:
   - Getting Started:
       - Quick Start: index.md
       - Basic Usage: usage.md
-  - Application:
-      - Features: pages/app/features.md
-      - Index:
-          - File index: pages/app/index/file.md
-      - Settings:
-          - pages/app/settings/overview.md
-          - pages/app/settings/user-settings.md
-      - Extension:
-          - User management: pages/app/ext/user-management.md
-      - Customize flow logic: pages/app/customize-flows.md
-      - Customize UI: pages/app/customize-ui.md
-      - Functional description: pages/app/functional-description.md
+  # - Application:
+  #     - Customize UI: pages/app/customize-ui.md
+  # - Functional description: pages/app/functional-description.md
   - Development:
       - development/index.md
       - Contributing: development/contributing.md
-      - Data & Data Structure Components: development/data-components.md
+      # - Data & Data Structure Components: development/data-components.md
+      # - Features: pages/app/features.md
+      - Components:
+          - Index:
+              - File index: pages/app/index/file.md
+          - Settings:
+              - pages/app/settings/overview.md
+              - pages/app/settings/user-settings.md
+          - Extension:
+              - User management: pages/app/ext/user-management.md
+      - Customize flow logic: pages/app/customize-flows.md
       - Creating a Component: development/create-a-component.md
-      - Utilities: development/utilities.md
   # generated using gen-files + literate-nav
   - API Reference: reference/
+  - Issue Tracker: "https://github.com/Cinnamon/kotaemon/issues"
 
 markdown_extensions:
   - admonition
+  - md_in_html
   - pymdownx.highlight:
       use_pygments: true
       anchor_linenums: true
@@ -58,7 +60,7 @@ plugins:
       scripts:
         - docs/scripts/generate_reference_docs.py
   - literate-nav:
-      nav_file: NAV.md
+      nav_file: Summary.md
   - mkdocstrings:
       handlers:
         python: