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@ClavelLab

The Clavel lab

This is the official GitHub account for the research group of Prof. Thomas Clavel.

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  1. MiMiC MiMiC Public

    Minimal Microbial Consortia creation tools

    R 8 4

  2. Protologger Protologger Public

    Forked from thh32/Protologger

    Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

    Python

  3. SCD SCD Public

    Anaerobic Single Cell Dispensing (SCD) for anaerobic cultivation of bacteria from complex samples

  4. maldipickr maldipickr Public

    Dereplicate And Cherry-pick Mass Spectrometry Spectra

    R 2

Repositories

Showing 10 of 11 repositories
  • github-repo-stats Public

    Statistics aggregation for Github repositories for NFDI4Microbiota KPI

    ClavelLab/github-repo-stats’s past year of commit activity
    0 1 0 0 Updated Dec 23, 2024
  • consprot Public

    High-throughput delineation of bacterial genera

    ClavelLab/consprot’s past year of commit activity
    Nextflow 0 0 0 0 Updated Nov 15, 2024
  • template-dereplication-workflow Public

    Workflow template to dereplicate and cherry-pick mass spectrometry spectra

    ClavelLab/template-dereplication-workflow’s past year of commit activity
    R 0 GPL-3.0 0 1 0 Updated Nov 14, 2024
  • maldipickr Public

    Dereplicate And Cherry-pick Mass Spectrometry Spectra

    ClavelLab/maldipickr’s past year of commit activity
    R 2 GPL-3.0 0 4 (1 issue needs help) 0 Updated Sep 13, 2024
  • genome-assembly Public

    A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab

    ClavelLab/genome-assembly’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Jun 13, 2024
  • miBC Public

    The Mouse Intestinal Bacterial Collection

    ClavelLab/miBC’s past year of commit activity
    1 1 0 0 Updated Apr 24, 2024
  • maldipickrGUI Public

    Workflow template to dereplicate and cherry-pick mass spectrometry spectraAn interactive interface to run reproducible workflow to dereplicate and cherry-pick mass spectrometry spectra with the 'maldipickr' package.

    ClavelLab/maldipickrGUI’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Dec 18, 2023
  • workshop-biometadata-01 Public
    ClavelLab/workshop-biometadata-01’s past year of commit activity
    TeX 0 CC-BY-4.0 0 0 0 Updated Nov 27, 2023
  • Protologger Public Forked from thh32/Protologger

    Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

    ClavelLab/Protologger’s past year of commit activity
    Python 0 3 0 0 Updated Apr 11, 2023
  • SCD Public

    Anaerobic Single Cell Dispensing (SCD) for anaerobic cultivation of bacteria from complex samples

    ClavelLab/SCD’s past year of commit activity
    0 0 0 0 Updated Nov 28, 2022
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