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Merge pull request #962 from CliMA/gb/deps
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Update dependencies
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@Sbozzolo
Sbozzolo authored Sep 25, 2024
2 parents 0af151b + bae8621 commit 1232d85
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Showing 9 changed files with 314 additions and 1,268 deletions.
2 changes: 1 addition & 1 deletion Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ ClimaComms = "0.5.6, 0.6"
ClimaCore = "0.14.6"
ClimaCoreTempestRemap = "0.3"
Dates = "1"
JLD2 = "0.4"
JLD2 = "0.4, 0.5"
NCDatasets = "0.11, 0.12, 0.13, 0.14.2"
SciMLBase = "1, 2"
StaticArrays = "1"
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466 changes: 66 additions & 400 deletions experiments/ClimaCore/Manifest.toml
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104 changes: 52 additions & 52 deletions experiments/ClimaCore/sea_breeze/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,34 +5,38 @@ manifest_format = "2.0"
project_hash = "316c1d4547278d00d7ec1d28019997cfd810b793"

[[deps.ADTypes]]
git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0"
git-tree-sha1 = "5a5eafb8344b81b8c2237f8a6f6b3602b3f6180e"
uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
version = "1.7.1"
version = "1.8.1"
weakdeps = ["ChainRulesCore", "EnzymeCore"]

[deps.ADTypes.extensions]
ADTypesChainRulesCoreExt = "ChainRulesCore"
ADTypesEnzymeCoreExt = "EnzymeCore"

[[deps.Accessors]]
deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"]
git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a"
deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"]
git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8"
uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
version = "0.1.37"
version = "0.1.38"

[deps.Accessors.extensions]
AccessorsAxisKeysExt = "AxisKeys"
AccessorsDatesExt = "Dates"
AccessorsIntervalSetsExt = "IntervalSets"
AccessorsStaticArraysExt = "StaticArrays"
AccessorsStructArraysExt = "StructArrays"
AccessorsTestExt = "Test"
AccessorsUnitfulExt = "Unitful"

[deps.Accessors.weakdeps]
AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"

[[deps.Adapt]]
Expand Down Expand Up @@ -106,9 +110,9 @@ version = "0.1.0"

[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
git-tree-sha1 = "dce2e49fc53490efb39161267d74f27be0ae2cee"
git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.7.4"
version = "1.7.5"
weakdeps = ["SparseArrays"]

[deps.BandedMatrices.extensions]
Expand All @@ -130,9 +134,9 @@ version = "0.1.6"

[[deps.BlockArrays]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"]
git-tree-sha1 = "5c0ffe1dff8cb7112de075f1b1cb32191675fcba"
git-tree-sha1 = "d434647f798823bcae510aee0bc0401927f64391"
uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
version = "1.1.0"
version = "1.1.1"
weakdeps = ["BandedMatrices"]

[deps.BlockArrays.extensions]
Expand Down Expand Up @@ -175,9 +179,9 @@ version = "1.18.0+2"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra"]
git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f"
git-tree-sha1 = "3e4b134270b372f2ed4d4d0e936aabaefc1802bc"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.24.0"
version = "1.25.0"
weakdeps = ["SparseArrays"]

[deps.ChainRulesCore.extensions]
Expand All @@ -198,9 +202,9 @@ version = "0.6.4"

[[deps.ClimaCore]]
deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"]
git-tree-sha1 = "9e5f2c9894491207d08c6219afa73fc31dd15fd3"
git-tree-sha1 = "527b11c35f00db0064b77a25fc881f2a2982abda"
uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
version = "0.14.13"
version = "0.14.16"

[deps.ClimaCore.extensions]
ClimaCoreCUDAExt = "CUDA"
Expand Down Expand Up @@ -229,10 +233,10 @@ uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7"
version = "0.1.1"

[[deps.ClimaTimeSteppers]]
deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "56d5c0e5181281e86d4cc4b109b980882c30af3d"
deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "396fb5706c55b40bf7ca30498c1ea2a045827f9a"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.33"
version = "0.7.37"

[deps.ClimaTimeSteppers.extensions]
ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"]
Expand Down Expand Up @@ -408,9 +412,9 @@ version = "1.9.1"

[[deps.DiffEqBase]]
deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
git-tree-sha1 = "d7d43a1cc11dc4e4e5378816ae720fccd75a77c8"
git-tree-sha1 = "fa7d580038451a8df4434ef5b079ac9b2d486194"
uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
version = "6.155.0"
version = "6.155.1"

[deps.DiffEqBase.extensions]
DiffEqBaseCUDAExt = "CUDA"
Expand Down Expand Up @@ -565,9 +569,9 @@ version = "0.8.5"

[[deps.FFMPEG]]
deps = ["FFMPEG_jll"]
git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8"
git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00"
uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
version = "0.4.1"
version = "0.4.2"

[[deps.FFMPEG_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
Expand Down Expand Up @@ -842,9 +846,9 @@ weakdeps = ["Random", "RecipesBase", "Statistics"]
IntervalSetsStatisticsExt = "Statistics"

[[deps.InverseFunctions]]
git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1"
git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.16"
version = "0.1.17"
weakdeps = ["Dates", "Test"]

[deps.InverseFunctions.extensions]
Expand All @@ -863,9 +867,9 @@ version = "1.0.0"

[[deps.JLD2]]
deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
git-tree-sha1 = "a0746c21bdc986d0dc293efa6b1faee112c37c28"
git-tree-sha1 = "9b8b3233d4a611a68f6cbcba96049c8d6fd3de73"
uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
version = "0.4.53"
version = "0.5.4"

[[deps.JLFzf]]
deps = ["Pipe", "REPL", "Random", "fzf_jll"]
Expand Down Expand Up @@ -905,9 +909,9 @@ version = "0.6.0"

[[deps.KernelAbstractions]]
deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
git-tree-sha1 = "cb1cff88ef2f3a157cbad75bbe6b229e1975e498"
git-tree-sha1 = "045d41a364a81e357757c566b5a69fd4a2a2c445"
uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
version = "0.9.25"
version = "0.9.26"
weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"]

[deps.KernelAbstractions.extensions]
Expand Down Expand Up @@ -945,9 +949,9 @@ version = "3.0.0+1"

[[deps.LLVM]]
deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
git-tree-sha1 = "25bbbfbb22539b44ad425cbdff340a40bfaa1867"
git-tree-sha1 = "4ad43cb0a4bb5e5b1506e1d1f48646d7e0c80363"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
version = "9.1.0"
version = "9.1.2"

[deps.LLVM.extensions]
BFloat16sExt = "BFloat16s"
Expand All @@ -963,9 +967,9 @@ version = "0.0.34+0"

[[deps.LLVMOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626"
git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929"
uuid = "1d63c593-3942-5779-bab2-d838dc0a180e"
version = "17.0.6+0"
version = "18.1.7+0"

[[deps.LRUCache]]
git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59"
Expand All @@ -978,9 +982,9 @@ weakdeps = ["Serialization"]

[[deps.LZO_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d"
git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731"
uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.2+0"
version = "2.10.2+1"

[[deps.LaTeXStrings]]
git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
Expand Down Expand Up @@ -1207,9 +1211,9 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"]

[[deps.Lz4_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "7f26c8fc5229e68484e0b3447312c98e16207d11"
git-tree-sha1 = "abf88ff67f4fd89839efcae2f4c39cbc4ecd0846"
uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
version = "1.10.0+0"
version = "1.10.0+1"

[[deps.MKL_jll]]
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"]
Expand Down Expand Up @@ -1440,9 +1444,9 @@ version = "1.4.3"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1b35263570443fdd9e76c76b7062116e2f374ab8"
git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "3.0.15+0"
version = "3.0.15+1"

[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1588,9 +1592,9 @@ version = "1.4.3"

[[deps.PrettyTables]]
deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]
git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7"
git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
version = "2.3.2"
version = "2.4.0"

[[deps.Printf]]
deps = ["Unicode"]
Expand Down Expand Up @@ -1718,9 +1722,9 @@ version = "0.6.43"

[[deps.SciMLBase]]
deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
git-tree-sha1 = "952e09c65264fe2a8155dd6aad60c188a0b83f69"
git-tree-sha1 = "71857d6bab17e7ac6802d86ffcc75423b8c1d812"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.53.0"
version = "2.54.0"

[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -1784,15 +1788,15 @@ uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f"
version = "1.0.3"

[[deps.SimpleBufferStream]]
git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1"
git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1"
uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7"
version = "1.1.0"
version = "1.2.0"

[[deps.SimpleNonlinearSolve]]
deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"]
git-tree-sha1 = "4d7a7c177bcb4c6dc465f09db91bfdb28c578919"
git-tree-sha1 = "97a7e10717bd27e600ba55da9d90a5628c1a403b"
uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7"
version = "1.12.0"
version = "1.12.2"

[deps.SimpleNonlinearSolve.extensions]
SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -1926,9 +1930,9 @@ version = "0.5.7"

[[deps.StringManipulation]]
deps = ["PrecompileTools"]
git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5"
git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3"
uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
version = "0.3.4"
version = "0.4.0"

[[deps.SuiteSparse_jll]]
deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
Expand Down Expand Up @@ -1977,20 +1981,16 @@ version = "1.10.0"

[[deps.TaylorSeries]]
deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423"
git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2"
uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
version = "0.17.8"
version = "0.17.3"

[deps.TaylorSeries.extensions]
TaylorSeriesIAExt = "IntervalArithmetic"
TaylorSeriesJLD2Ext = "JLD2"
TaylorSeriesRATExt = "RecursiveArrayTools"
TaylorSeriesSAExt = "StaticArrays"

[deps.TaylorSeries.weakdeps]
IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253"
JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"

[[deps.TempestRemap_jll]]
Expand Down
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