Release 4.16.1

change delivery of vcf to case level

Release 4.16.0

Merge pull request #171 from Clinical-Genomics/update_threshold(minor)

Added

• Update the iVarFrequency threshold
• Fix typo to be consistent with gms-artic pipeline

Release 4.15.0

Merge pull request #164 from Clinical-Genomics/nextclade_summaryfile (minor)

Added

• nextclade summary parser

Release 4.14.2

Merge pull request #165 from Clinical-Genomics/add-2-bl

Create add-to-bl.yml

Release 4.14.1

Merge pull request #159 from Clinical-Genomics/container-split

Container split

Release 4.14.0

Merge pull request #158 from Clinical-Genomics/rename-files (minor)

New gms-artic version and change name of files for nanopore analyses

Release 4.13.0

Merge pull request #156 from Clinical-Genomics/additional-deliverables (minor)

Add pangolin FOHM file and deliverables file

Release 4.12.0

Merge pull request #155 from Clinical-Genomics/store-files (minor)

Concatenated pangolin for nanopore

Release 4.11.15

Merge pull request #153 from Clinical-Genomics/variants-nanopore

Variants nanopore

Release 4.11.14

Merge pull request #152 from Clinical-Genomics/add-barcodes

Nanopore support