Use correct flag for fluffy

Clinical-Genomics · Jan 28, 2025 · 63a67a0 · 63a67a0
1 parent 99c9688
commit 63a67a0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cg/meta/workflow/fluffy.py b/cg/meta/workflow/fluffy.py
@@ -245,7 +245,7 @@ def run_fluffy(
         if not workflow_config:
             workflow_config = self.fluffy_config.as_posix()
         batch_ref_flag = "" if external_ref else "--batch-ref"
-        use_bwa_mem_flag = "--use-bwa-mem" if use_bwa_mem else ""
+        use_bwa_mem_flag = "--bwa-mem" if use_bwa_mem else ""
         command_args = [
             "--config",
             workflow_config,