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cg

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cg stands for Clinical Genomics; a clinical sequencing platform under SciLifeLab

In this context, cg provides the interface between these tools to facilitate automation and other necessary cross-talk. It also exposes some APIs:

Contributing

Please check out our guide for contributing to cg

Installation

Cg written in Python 3.9+ and is available on the Python Package Index (PyPI).

pip install cg

If you would like to install the latest development version, use poetry.

git clone https://github.com/Clinical-Genomics/cg
cd cg
poetry install