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Final touch
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Chiara Rasi committed Jun 20, 2024
1 parent bd6191d commit 799e86b
Showing 1 changed file with 5 additions and 3 deletions.
8 changes: 5 additions & 3 deletions src/chanjo2/endpoints/coverage.py
Original file line number Diff line number Diff line change
Expand Up @@ -185,9 +185,11 @@ def d4_genes_condensed_summary(
for value in genes_coverage_completeness.values()
]
condensed_stats[sample.name] = {
"mean_coverage": mean(genes_mean_coverage) if genes_mean_coverage else "NA",
"coverage_completeness": (
mean(genes_coverage_completeness_values)
"mean_coverage": (
round(mean(genes_mean_coverage), 2) if genes_mean_coverage else "NA"
),
"coverage_completeness_percent": (
round(mean(genes_coverage_completeness_values), 2)
if genes_coverage_completeness_values
else "NA"
),
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