Small improvements

Clinical-Genomics · Sep 30, 2024 · db68c25 · db68c25
1 parent a4584af
commit db68c25
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -14,7 +14,7 @@
 - Updated tests workflow to cargo install the latest d4tools from git (master branch)
 - Computing coverage completeness stats using d4tools `perc_cov` stat function (much quicker reports)
 - Moved functions computing the coverage stats to a separate `meta/handle_coverage_stats.py` module
-- Refactored gene code computing stats for gene overview
+- Refactored code collecting stats shown on gene overview report
 ### Fixed
 - Updated dependencies including `certifi` to address dependabot alert
 - Update pytest to v.7.4.4 to address a `ReDoS` vulnerability

diff --git a/src/chanjo2/meta/handle_d4.py b/src/chanjo2/meta/handle_d4.py
@@ -154,7 +154,7 @@ def get_gene_overview_stats(
     sql_intervals: List[SQLTranscript],
     samples: List[ReportQuerySample],
     completeness_thresholds=List[int],
-):
+) -> Dict[str, list]:
     """Returns stats to be included in the gene overview page."""
     interval_ids_coords: List[Tuple[str, Tuple[str, int, int]]] = [
         (interval.ensembl_id, (interval.chromosome, interval.start, interval.stop))