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Expand coverage report explanation to better understand how coverage and coverage completeness values were calculated #327

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Jul 22, 2024
Merged

Expand coverage report explanation to better understand how coverage and coverage completeness values were calculated #327

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Expand coverage report explanation to better understand how coverage …
Jul 15, 2024
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Remove bootstrap tooltip code
Jul 15, 2024
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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@@ -1,3 +1,7 @@
## [unreleased]
### Added
- Improve report explanation to better interpret average coverage and coverage completeness stats shown on the coverage report

## [1.9]
### Added
- Condensed `/coverage/d4/genes/summary` for condensed stats over a gene list
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8 changes: 7 additions & 1 deletion src/chanjo2/templates/report.html
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Expand Up @@ -179,10 +179,16 @@ <h4>General</h4>
</p>
{% endif %}

<p>
<strong>Average coverage</strong>:
defined as the mean coverage over a list of genes. Values were calculated as the mean of coverage values over single genes or intervals (transcripts or exons) from single genes
e.g. 38.24
</p>

<p>
<strong>Completeness</strong>:
defined as the ratio of bases
sequenced deeper than a specified cutoff
sequenced deeper than a specified cutoff. Values were calculated across pooled genes or genes' intervals, according to the sequencing technology used
e.g. 10x
</p>

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