MANE transcripts report

[northwestwitch]

Description

Added/Changed/Fixed

• Closes MANE transcripts #354

How to test

• Tested in a combo with this Scout branch, see instructions on that PR

Expected outcome

• MANE reports should be created using the new endpoint

Review

• Tests executed by Jakob37, CR
• "Merge and deploy" approved by Jakob37

This version is a

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 78.18182% with 12 lines in your changes missing coverage. Please review.

Project coverage is 93.13%. Comparing base (719f1b8) to head (106844c).
Report is 79 commits behind head on main.

Files with missing lines	Patch %	Lines
src/chanjo2/meta/handle_report_contents.py	60.00%	10 Missing ⚠️
src/chanjo2/endpoints/overview.py	84.61%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #365      +/-   ##
==========================================
+ Coverage   90.18%   93.13%   +2.95%     
==========================================
  Files          30       31       +1     
  Lines        1457     1501      +44     
==========================================
+ Hits         1314     1398      +84     
+ Misses        143      103      -40     

Flag	Coverage Δ
unittests	93.13% <78.18%> (+2.95%)	⬆️

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[northwestwitch]

This one is ready for review now, but I realise that it might be hard to test without also a PR in scout.. I'll work on that as well!

[Jakob37]

Very nice, thanks 😄 Testing worked well, and only minimal comments on the code.

Looking forward to hear our geneticists thoughts on this. I think it will very helpful for them.

[Jakob37]

Code identations seems off here and below

[northwestwitch]

Looks OK on the editor though, weird!

I think I'll leave it as it is

[Jakob37]

Might be mixed tabs and spaces? (Anyway, not a big issue)

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

[northwestwitch]

Looking forward to hear our geneticists thoughts on this. I think it will very helpful for them.

Cool, thanks for the review. Let me know how it goes! Merging now!