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Database update refactory and "intervals_count_by_build" endpoint

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@northwestwitch northwestwitch released this 18 Feb 12:11
· 11 commits to main since this release
91d073f

[3.2]

Added

  • /intervals/intervals_count_by_build endpoint, which retuns the number of genes, transcripts, exons for each genome build

Changed

  • Updated schug library to v1.10
  • Disable SQLAlchemy logger
  • To avoid timeout errors, update genes, transcripts exons only from pre-downloaded files from schug
  • Documentation on how to update genes, transcripts and exons database tables
  • Renamed Pydantic orm_mode config param to model_config

Removed

  • Code for downloading resources from Ensembl using the schug library