BEAUti
Clone fix that deals with edited priors
Package manager can now install specific package versions, not only the latest
Improved data type guessing on importing FASTA files
Log MRCAPriors imported through NEXUS files
BEAST
Added -strictversions flag to indicate only package versions specified in XML should be loaded.
Tree parser fixes
StarBeastStartState now takes bounds of parameters it sets in account
Allow nested operator schedules
Improved error reporting
Package manager
Added -version flag to specify exactly which package version to install.
TreeAnnotator
Now calculates 2D HPDs by default (for phylogeography analyses)
Added -nohpd2D flag to suppress 2D HPD calculation
Added -noSA flag to suppress tree set being seen as that of a sampled ancestor analysis
