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@Craven-Biostat-Lab

Mark Craven's Research Lab

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  1. anamod anamod Public

    Forked from cloudbopper/anamod

    Feature Importance Analysis of Models

    Python 11 3

  2. mihifepe mihifepe Public

    Model Interpretability via Hierarchical Feature Perturbation

    Python 4 1

  3. subnetwork_inference subnetwork_inference Public

    Source code and data files for subnetwork inference paper

    Python 2

  4. SARS-CoV-2-Analysis SARS-CoV-2-Analysis Public

    Python 2

  5. GADGET GADGET Public

    Genes <-> Text <-> Metabolites

    Python 1

  6. relation_extraction relation_extraction Public

    Model for extracting relations between genes and proteins

    Python 1

Repositories

Showing 10 of 17 repositories
  • graph-molecular-phenotype-prediction Public

    Code accompanying the paper "A graph-based learning approach to predict the effects of gene perturbations on molecular phenotypes" by Jin et al.

    Craven-Biostat-Lab/graph-molecular-phenotype-prediction’s past year of commit activity
    0 MIT 0 0 0 Updated Jan 23, 2025
  • esm-1v-workflow Public

    Workflow and supporting code for evaluating every amino acid human protein substitution using ESM-1v.

    Craven-Biostat-Lab/esm-1v-workflow’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Dec 16, 2024
  • morphology-prediction Public

    Predictive modeling of cell morphology: an IGVF project.

    Craven-Biostat-Lab/morphology-prediction’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jul 16, 2024
  • stringdb_alias Public

    A python package for working with string-db.org aliases (gene and protein ID mapping).

    Craven-Biostat-Lab/stringdb_alias’s past year of commit activity
    Python 1 MIT 0 2 0 Updated Dec 6, 2022
  • synmod Public Forked from cloudbopper/synmod

    Temporal model synthesis

    Craven-Biostat-Lab/synmod’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Mar 23, 2022
  • anamod Public Forked from cloudbopper/anamod

    Feature Importance Analysis of Models

    Craven-Biostat-Lab/anamod’s past year of commit activity
    Python 11 MIT 4 0 0 Updated Mar 23, 2022
  • generalizedtrees Public Forked from sverchkov/generalizedtrees

    Library for tree models: decision trees, model trees, mimic models, etc.

    Craven-Biostat-Lab/generalizedtrees’s past year of commit activity
    Python 1 BSD-3-Clause 1 4 0 Updated May 3, 2021
  • SARS-CoV-2-Analysis Public
    Craven-Biostat-Lab/SARS-CoV-2-Analysis’s past year of commit activity
    Python 2 0 0 0 Updated Mar 21, 2021
  • data-generators Public

    Python package for generating data fit to a dataset

    Craven-Biostat-Lab/data-generators’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jun 13, 2020
  • mihifepe Public

    Model Interpretability via Hierarchical Feature Perturbation

    Craven-Biostat-Lab/mihifepe’s past year of commit activity
    Python 4 MIT 1 3 0 Updated Mar 30, 2020
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