suggested fixes #394
Workflow file for this run
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| # Based on github template: https://github.com/actions/starter-workflows/blob/main/ci/python-package.yml | |
| name: Tests | |
| on: | |
| schedule: | |
| - cron: '0 9 * * 1' # run every Monday at 9 AM UTC (3 am PST) | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: ${{ matrix.python-version }}, ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: ['3.12', '3.11', '3.10'] # ['3.8', '3.x'] | |
| exclude: | |
| # tests with ubuntu-latest, python latest | |
| # are executed by build_docs.yaml | |
| - os: ubuntu-latest | |
| python-version: 3.12 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| - name: Fetch all Git tags | |
| run: git fetch --prune --unshallow --tags | |
| - name: Get current date | |
| id: date | |
| run: echo "date=$(date +%Y-%m-%d)" >> "${GITHUB_OUTPUT}" | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: ci/test_environment.yaml | |
| cache-environment: false | |
| cache-downloads: false | |
| # persist on the same day. | |
| # cache-environment-key: environment-${{ steps.date.outputs.date }} | |
| # cache-downloads-key: downloads-${{ steps.date.outputs.date }} | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| init-shell: >- | |
| bash | |
| powershell | |
| - name: Conda info | |
| shell: bash -l {0} | |
| run: micromamba info | |
| - name: Add executables to path | |
| shell: bash | |
| run: | | |
| if [[ ! -d "$HOME/.local/bin" ]]; then | |
| mkdir -p "$HOME/.local/bin"; | |
| fi | |
| # copy modflow bins to local dir to add to PATH later | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| d="win" | |
| elif [ "$RUNNER_OS" == "macOS" ]; then | |
| d="mac" | |
| elif [ "$RUNNER_OS" == "Linux" ]; then | |
| d="linux" | |
| else | |
| d="unexpectedos" | |
| exit 1 | |
| fi | |
| cp -r bin/$d/. "$HOME/.local/bin/" | |
| echo "$HOME/.local/bin" >> $GITHUB_PATH | |
| echo $GITHUB_PATH | |
| - name: Test install from git | |
| shell: bash -l {0} | |
| run: | | |
| pip install git+https://github.com/aleaf/modflow-setup@develop | |
| cd .. | |
| python -c "import mfsetup" | |
| cd modflow-setup | |
| - name: Install Modflow-setup and ipykernel | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| python -m ipykernel install --user --name mfsetup_ci --display-name "mfsetup_ci" | |
| - name: Install latest PyPI flopy | |
| shell: bash -l {0} | |
| if: ${{ matrix.python-version == 3.11}} | |
| run: pip install flopy --force-reinstall | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: | | |
| micromamba list | |
| pip list | |
| #- name: Lint with flake8 | |
| # run: | | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Run tests | |
| shell: bash -l {0} | |
| timeout-minutes: 75 | |
| run: | | |
| coverage run -m pytest -v --durations=20 --timeout=300 | |
| - name: Upload coverage | |
| shell: bash -l {0} | |
| run: | | |
| coverage report -m | |
| codecov |