publish docker image david #146
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: PoreAnalyser #PoreFinding_Ellipsoid # PoreFinding_pdb PoreFinder | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude=chimeraX_pore.py | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Set execute permissions | |
| run: chmod +x PoreAnalyser/hole2/hole # PoreFinding/hole2/hole | |
| - name: Debugging Output | |
| run: | | |
| echo "ls -la /home/runner/work/PoreAnalyser/" | |
| ls -la /home/runner/work/PoreAnalyser/ | |
| echo "ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/" | |
| ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/ | |
| echo "ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/" | |
| ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/ | |
| echo "pwd" | |
| pwd | |
| echo "Current directory: $(pwd)" | |
| - name: Check Architecture Compatibility | |
| run: | | |
| file /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/hole | |
| #- name: Run hole2 | |
| # run: | | |
| # # echo "hole2/./hole" | |
| # # hole2/./hole | |
| # ./home/runner/work/PoreFinding_pdb/PoreFinding_pdb/hole2/hole | |
| - name: Test with unittest | |
| run: | | |
| python -m unittest | |
| - name: Debug Info | |
| run: | | |
| echo "Current Version: $(python -c "import PoreAnalyser as pf; print(pf.__version__)")" | |