Added new module for Toulligqc (#5131) #16
Darcy220606test.yml
on: push
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
0s
Annotations
103 errors and 3 warnings
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nf-core-lint (cellranger/mkgtf)
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nf-core-lint (cellranger/mkvdjref)
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nf-core-lint (cellranger/count)
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nf-core-lint (bcftools/filter)
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nf-core-lint (cellranger/mkref)
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nf-core-lint (cellranger/vdj)
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nf-core-lint (controlfreec/freec)
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nf-core-lint (controlfreec/assesssignificance)
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nf-core-lint (cellranger/multi)
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nf-core-lint (controlfreec/makegraph)
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nf-core-lint (crabz/compress)
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nf-core-lint (controlfreec/makegraph2)
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nf-core-lint (crabz/decompress)
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nf-core-lint (gtdbtk/classifywf)
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nf-core-lint (hmmer/hmmsearch)
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nf-core-lint (meryl/count)
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nf-core-lint (genomescope2)
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nf-core-lint (mosdepth)
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nf-core-lint (meryl/unionsum)
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nf-core-lint (meryl/histogram)
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nf-core-lint (plink/epistasis)
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nf-core-lint (plink/fastepistasis)
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nf-core-lint (plink/ld)
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nf-core-lint (plink/gwas)
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nf-core-lint (taxonkit/name2taxid)
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nf-core-lint (subworkflows/fastq_taxonomic_profile_metaphlan)
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nf-core-lint (toulligqc)
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nf-test (bcftools/filter, docker)
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nf-test (bcftools/filter, singularity)
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nf-test (cellranger/count, docker)
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nf-test (bcftools/filter, conda)
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nf-test (cellranger/count, singularity)
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nf-test (cellranger/mkgtf, docker)
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nf-test (cellranger/mkgtf, singularity)
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nf-test (cellranger/mkref, docker)
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nf-test (cellranger/mkref, singularity)
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nf-test (cellranger/mkvdjref, singularity)
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nf-test (cellranger/mkvdjref, docker)
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nf-test (cellranger/multi, singularity)
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nf-test (cellranger/multi, docker)
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nf-test (cellranger/vdj, docker)
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nf-test (controlfreec/assesssignificance, docker)
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nf-test (controlfreec/assesssignificance, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (cellranger/vdj, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (controlfreec/freec, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (controlfreec/makegraph, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (controlfreec/freec, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (controlfreec/freec, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (controlfreec/assesssignificance, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (controlfreec/makegraph, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (controlfreec/makegraph, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-test (controlfreec/makegraph2, conda)
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nf-test (crabz/compress, docker)
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nf-test (crabz/compress, conda)
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nf-test (controlfreec/makegraph2, singularity)
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nf-test (controlfreec/makegraph2, docker)
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nf-test (crabz/decompress, conda)
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nf-test (crabz/compress, singularity)
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nf-test (crabz/decompress, singularity)
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nf-test (crabz/decompress, docker)
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nf-test (genomescope2, docker)
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nf-test (genomescope2, conda)
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nf-test (genomescope2, singularity)
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nf-test (gtdbtk/classifywf, conda)
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nf-test (gtdbtk/classifywf, docker)
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nf-test (hmmer/hmmsearch, docker)
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nf-test (gtdbtk/classifywf, singularity)
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nf-test (hmmer/hmmsearch, conda)
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nf-test (meryl/count, docker)
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nf-test (meryl/count, conda)
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nf-test (meryl/histogram, docker)
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nf-test (meryl/count, singularity)
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nf-test (hmmer/hmmsearch, singularity)
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nf-test (meryl/histogram, conda)
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nf-test (meryl/unionsum, conda)
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nf-test (meryl/histogram, singularity)
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nf-test (plink/epistasis, docker)
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nf-test (meryl/unionsum, docker)
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nf-test (mosdepth, singularity)
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nf-test (meryl/unionsum, singularity)
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nf-test (mosdepth, conda)
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nf-test (mosdepth, docker)
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nf-test (plink/gwas, conda)
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nf-test (plink/fastepistasis, singularity)
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nf-test (plink/epistasis, singularity)
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nf-test (plink/epistasis, conda)
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nf-test (plink/fastepistasis, docker)
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nf-test (plink/ld, conda)
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nf-test (plink/gwas, singularity)
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nf-test (plink/fastepistasis, conda)
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nf-test (subworkflows/fastq_taxonomic_profile_metaphlan, singularity)
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nf-test (plink/ld, docker)
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nf-test (subworkflows/fastq_taxonomic_profile_metaphlan, docker)
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nf-test (plink/gwas, docker)
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nf-test (taxonkit/name2taxid, conda)
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nf-test (plink/ld, singularity)
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nf-test (toulligqc, conda)
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nf-test (toulligqc, singularity)
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nf-test (taxonkit/name2taxid, docker)
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nf-test (subworkflows/fastq_taxonomic_profile_metaphlan, conda)
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nf-test (taxonkit/name2taxid, singularity)
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nf-test (toulligqc, docker)
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confirm-pass
Process completed with exit code 1.
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nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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