Merge pull request #49 from DasLab/fix/spotrna-concurrency

Fix concurrency bug in spotrna
DasLab · Jan 25, 2025 · 9a65ddd · 9a65ddd
2 parents 0061259 + 2b4b724
commit 9a65ddd
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/arnie/pk_predictors.py b/src/arnie/pk_predictors.py
@@ -308,7 +308,8 @@ def _run_spotrna(seq, cpu=32):
     spotrna_conda_env = package_locs["spotrna_conda_env"]
     out_folder = get_random_folder()
     mkdir(out_folder)
-    fasta_file = f"{out_folder}/temp.fasta"
+    input_id = local_rand_filename()
+    fasta_file = f"{out_folder}/{input_id}.fasta"
     f = open(fasta_file, "w")
     f.write(">seq\n")
     f.write(seq)
@@ -472,4 +473,3 @@ def _nupack_mfe_pk(seq):
     remove(f'{fasta_file}.mfe')
     rmdir(out_folder)
     return struct
-