[R] Ran make requirements_update

DataBiosphere · Sep 25, 2024 · 1d3ad1a · 1d3ad1a
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diff --git a/...heels/runtime/MarkupSafe-2.1.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/...heels/runtime/MarkupSafe-2.1.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/...heels/runtime/MarkupSafe-2.1.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/...heels/runtime/MarkupSafe-2.1.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/bin/wheels/runtime/cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/cffi-1.17.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/bin/wheels/runtime/cffi-1.17.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/...ntime/charset_normalizer-3.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/...ntime/charset_normalizer-3.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/...ntime/charset_normalizer-3.3.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/...ntime/charset_normalizer-3.3.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/fastavro-1.8.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/bin/wheels/runtime/fastavro-1.8.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/fastavro-1.8.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/bin/wheels/runtime/fastavro-1.8.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/...inux_2_17_x86_64.manylinux2014_x86_64.whl → ...inux_2_17_x86_64.manylinux2014_x86_64.whl b/...inux_2_17_x86_64.manylinux2014_x86_64.whl → ...inux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/grpcio-1.66.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/bin/wheels/runtime/grpcio-1.66.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/grpcio-1.66.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/bin/wheels/runtime/grpcio-1.66.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/msgpack-1.0.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/bin/wheels/runtime/msgpack-1.0.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/msgpack-1.0.7-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/bin/wheels/runtime/msgpack-1.0.7-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/bin/wheels/runtime/setuptools-70.3.0-py3-none-any.whl b/bin/wheels/runtime/setuptools-70.3.0-py3-none-any.whl
diff --git a/...311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/...311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/...312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl b/...312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
diff --git a/requirements.all.txt b/requirements.all.txt
@@ -10,12 +10,12 @@ blinker==1.8.2
 boto3==1.28.63
 boto3-stubs==1.28.63
 botocore==1.31.63
-botocore-stubs==1.35.24
+botocore-stubs==1.35.27
 brotli==1.1.0
 cachetools==5.5.0
 certifi==2024.8.30
 cffi==1.17.1
-chalice==1.30.0+12
+chalice==1.31.2+13
 charset-normalizer==3.3.2
 chevron==0.14.0
 click==8.1.7
@@ -29,8 +29,8 @@ docutils==0.16
 elasticsearch==7.17.9
 elasticsearch-dsl==7.4.0
 et-xmlfile==1.1.0
-fastavro==1.8.2
-flake8==5.0.4
+fastavro==1.8.4
+flake8==6.1.0
 flask==3.0.3
 flask-basicauth==0.2.0
 flask-cors==5.0.0
@@ -57,15 +57,15 @@ http-message-signatures==0.4.4
 http_sfv==0.9.9
 httplib2==0.22.0
 idna==3.10
-importlib-resources==5.13.0
 inquirer==2.10.1
 itsdangerous==2.2.0
 jdcal==1.4.1
 jinja2==3.1.4
 jmespath==1.0.1
-jq==1.3.0
-jsonschema==4.17.3
-jsonschema-spec==0.1.6
+jq==1.5.0
+jsonschema==4.23.0
+jsonschema-path==0.3.3
+jsonschema-specifications==2023.12.1
 jwcrypto==1.5.6
 lazy-object-proxy==1.10.0
 locust==2.12.2
@@ -82,8 +82,8 @@ mypy-boto3-lambda==1.28.83
 mypy-boto3-s3==1.28.55
 mypy-boto3-sqs==1.28.82
 mypy-boto3-stepfunctions==1.28.36
-openapi-schema-validator==0.3.4
-openapi-spec-validator==0.5.1
+openapi-schema-validator==0.6.2
+openapi-spec-validator==0.7.1
 openpyxl==3.0.6
 orderedmultidict==1.0.1
 packaging==24.1
@@ -96,15 +96,14 @@ psutil==6.0.0
 py-partiql-parser==0.3.3
 pyasn1==0.6.1
 pyasn1_modules==0.4.1
-pycodestyle==2.9.1
+pycodestyle==2.11.1
 pycparser==2.22
-pyflakes==2.5.0
+pyflakes==3.1.0
 pygithub==1.56
 pyjwt==2.9.0
 pynacl==1.5.0
 pyopenssl==24.2.1
 pyparsing==3.1.4
-pyrsistent==0.20.0
 python-dateutil==2.9.0.post0
 python-dxf==11.4.0
 python-editor==1.0.4
@@ -113,11 +112,14 @@ pytz==2024.2
 pyyaml==6.0.1
 pyzmq==26.2.0
 readchar==4.2.0
+referencing==0.35.1
 requests==2.32.2
 requests-toolbelt==1.0.0
 requirements-parser==0.2.0+1
 responses==0.22.0
+rfc3339-validator==0.1.4
 roundrobin==0.0.4
+rpds-py==0.20.0
 rsa==4.7.2
 s3transfer==0.7.0
 setuptools==70.3.0

diff --git a/requirements.dev.trans.txt b/requirements.dev.trans.txt
@@ -1,6 +1,6 @@
 blessed==1.20.0
 blinker==1.8.2
-botocore-stubs==1.35.24
+botocore-stubs==1.35.27
 brotli==1.1.0
 click==8.1.7
 colorama==0.4.4
@@ -15,13 +15,13 @@ gitdb==4.0.11
 google-auth-httplib2==0.2.0
 greenlet==3.1.1
 httplib2==0.22.0
-importlib-resources==5.13.0
 inquirer==2.10.1
 itsdangerous==2.2.0
 jdcal==1.4.1
 jinja2==3.1.4
-jsonschema==4.17.3
-jsonschema-spec==0.1.6
+jsonschema==4.23.0
+jsonschema-path==0.3.3
+jsonschema-specifications==2023.12.1
 jwcrypto==1.5.6
 lazy-object-proxy==1.10.0
 mccabe==0.7.0
@@ -33,21 +33,23 @@ mypy-boto3-lambda==1.28.83
 mypy-boto3-s3==1.28.55
 mypy-boto3-sqs==1.28.82
 mypy-boto3-stepfunctions==1.28.36
-openapi-schema-validator==0.3.4
+openapi-schema-validator==0.6.2
 pathable==0.4.3
 psutil==6.0.0
 py-partiql-parser==0.3.3
-pycodestyle==2.9.1
-pyflakes==2.5.0
+pycodestyle==2.11.1
+pyflakes==3.1.0
 pyjwt==2.9.0
 pynacl==1.5.0
 pyparsing==3.1.4
-pyrsistent==0.20.0
 python-editor==1.0.4
 pyzmq==26.2.0
 readchar==4.2.0
+referencing==0.35.1
 requests-toolbelt==1.0.0
+rfc3339-validator==0.1.4
 roundrobin==0.0.4
+rpds-py==0.20.0
 smmap==5.0.1
 toml==0.10.2
 tqdm==4.66.5