[r] Fix: AnVIL indexer doesn't follow downstream links from files to …

…files (#4761, PR #4765)
DataBiosphere · Dec 1, 2022 · 68c0e09 · 68c0e09
2 parents 55336ab + 68777aa
commit 68c0e09
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Showing 5 changed files with 208 additions and 205 deletions.
diff --git a/src/azul/plugins/metadata/anvil/__init__.py b/src/azul/plugins/metadata/anvil/__init__.py
@@ -103,7 +103,7 @@ def _field_mapping(self) -> MetadataPlugin._FieldMapping:
                         'activity_type',
                         'assay_category',
                         'data_modality',
-                        'date_submitted',
+                        'date_created',
                         'document_id',
                         'source_datarepo_row_ids',
                     ]

diff --git a/src/azul/plugins/metadata/anvil/indexer/transform.py b/src/azul/plugins/metadata/anvil/indexer/transform.py
@@ -197,7 +197,7 @@ def _activity_types(cls) -> FieldTypes:
             'activity_type': null_str,
             'assay_category': null_str,
             'data_modality': null_str,
-            'date_submitted': null_datetime,
+            'date_created': null_datetime,
         }
 
     @classmethod

diff --git a/src/azul/plugins/metadata/anvil/service/response.py b/src/azul/plugins/metadata/anvil/service/response.py
@@ -204,7 +204,6 @@ def _non_pivotal_entity(self,
             'count',
             'data_modality',
             'file_format',
-            'file_type',
             'reference_assembly'
         }
     }