[r] Use DCP2 schema name for HCA replica_type (#6453)

src/azul/plugins/metadata/hca/indexer/transform.py

@@ -462,8 +462,8 @@ class BaseTransformer(Transformer, metaclass=ABCMeta):
     api_bundle: api.Bundle
 
     def replica_type(self, entity: EntityReference) -> str:
-        assert entity.entity_type == self.entity_type(), entity
-        return entity.entity_type.removesuffix('s')
+        api_entity = self.api_bundle.entities[UUID(entity.entity_id)]
+        return api_entity.schema_name
 
     @classmethod
     def aggregator(cls, entity_type: EntityType) -> Optional[EntityAggregator]:

test/service/test_manifest.py

@@ -1340,9 +1340,9 @@ def test_verbatim_jsonl_manifest(self):
                 ('links', 'links.json'),
                 ('cell_suspension', 'cell_suspension_0.json'),
                 ('project', 'project_0.json'),
-                ('file', 'sequence_file_0.json'),
-                ('file', 'sequence_file_1.json'),
-                ('sample', 'specimen_from_organism_0.json')
+                ('sequence_file', 'sequence_file_0.json'),
+                ('sequence_file', 'sequence_file_1.json'),
+                ('specimen_from_organism', 'specimen_from_organism_0.json')
             ]
         ]
         response = self._get_manifest(ManifestFormat.verbatim_jsonl, {})