Fix: AnVIL field size is inconsistently named (#4642)

DataBiosphere · Dec 17, 2022 · 79bb2d1 · 79bb2d1
1 parent a5602ef
commit 79bb2d1
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/azul/plugins/metadata/anvil/__init__.py b/src/azul/plugins/metadata/anvil/__init__.py
@@ -155,8 +155,10 @@ def _field_mapping(self) -> MetadataPlugin._FieldMapping:
                             'file_id',
                             'data_modality',
                             'file_format',
+                            'file_size',
                             'file_md5sum',
                             'reference_assembly',
+                            'file_name',
                             # Not in schema
                             'crc32',
                             'sha256',
@@ -166,8 +168,6 @@ def _field_mapping(self) -> MetadataPlugin._FieldMapping:
                     # These field names are hard-coded in the implementation of
                     # the repository service/controller.
                     **{
-                        'file_size': 'size',
-                        'file_name': 'name',
                         # Not in schema
                         'version': 'fileVersion',
                         'uuid': 'fileId',

diff --git a/test/integration_test.py b/test/integration_test.py
@@ -564,7 +564,7 @@ def _get_one_file(self, catalog: CatalogName) -> JSON:
         if config.is_hca_enabled(catalog):
             file_size_facet = 'fileSize'
         elif config.is_anvil_enabled(catalog):
-            file_size_facet = 'size'
+            file_size_facet = 'files.file_size'
         else:
             assert False, catalog
         for filters in [self._fastq_filter(catalog), {}]: