Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Create PFB-based verbatim manifest format for AnVIL (#6040) #6115

Merged
merged 11 commits into from
Apr 24, 2024
Merged

Create PFB-based verbatim manifest format for AnVIL (#6040) #6115

merged 11 commits into from
Apr 24, 2024

Commits on Apr 24, 2024

  1. Change row sorting in JSONL manifest test

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    5552252 View commit details
    Browse the repository at this point in the history

  2. Refactor JSONL manifest test

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    46f5df7 View commit details
    Browse the repository at this point in the history

  3. Add unit test for AnVIL JSONL manifest (#6140)

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    54eb44e View commit details
    Browse the repository at this point in the history

  4. Refactor canned file loading

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    7ef15e4 View commit details
    Browse the repository at this point in the history

  5. Refactor HCA supported manifest formats to match AnVIL

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    d3bfa68 View commit details
    Browse the repository at this point in the history

  6. Refactor avro_pfb.py

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    7bd2fc0 View commit details
    Browse the repository at this point in the history

  7. Extract ABC from verbatim manifest generator

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    cd113dc View commit details
    Browse the repository at this point in the history

  8. Include replica_type in JSONL manifest

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    cef2223 View commit details
    Browse the repository at this point in the history

  9. [a] Create PFB-based verbatim manifest format for AnVIL (#6040)

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    85fdaeb View commit details
    Browse the repository at this point in the history

  10. Add FIXME (#6139)

    @nadove-ucsc @hannes-ucsc
    nadove-ucsc authored and hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    827d610 View commit details
    Browse the repository at this point in the history

  11. Refactor and document PFB integration test

    @hannes-ucsc
    hannes-ucsc committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    8cb87e9 View commit details
    Browse the repository at this point in the history