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Inprove option doc wording
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adamnovak committed Sep 18, 2024
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Expand Up @@ -78,10 +78,9 @@ isn't. Can also be set to ``docker`` or ``singularity`` explicitly.

``--allCallOutputs``: Specifies whether outputs from all calls in a workflow
should be included alongside the outputs from the ``output`` section, when an
``output`` section is defined. For strict WDL 1.0 compliance, should be set to
``False``. Defaults to unset. If the workflow includes metadata for the
`Cromwell Output Organizer (croo)`_, will default to ``True``. Otherwise,
defaults to ``False``.
``output`` section is defined. For strict WDL spec compliance, should be set to
``False``. Usually defaults to ``False``. If the workflow includes metadata for
the `Cromwell Output Organizer (croo)`_, will default to ``True``.

.. _`Cromwell Output Organizer (croo)`: https://github.com/ENCODE-DCC/croo

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