Skip to content
@DeepMicroscopy

DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy

This is our central home for all our digital pathology projects, focusing on deep learning.

Popular repositories Loading

  1. SlideRunner SlideRunner Public

    SlideRunner is a tool for massive cell annotations in whole slide images

    Python 79 10

  2. Exact Exact Public

    An open source online platform for collaborative image labeling of almost everything

    JavaScript 62 20

  3. MITOS_WSI_CCMCT MITOS_WSI_CCMCT Public

    Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 29 9

  4. MITOS_WSI_CMC MITOS_WSI_CMC Public

    Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 21 10

  5. MIDOGpp MIDOGpp Public

    A large, multi-domain mitotic Figure Dataset

    Python 19 16

  6. MIDOG MIDOG Public

    MItosis DOmain Generalization Challenge 2021/2022

    Python 14 5

Repositories

Showing 10 of 50 repositories
  • AgenticPathologyReports Public

    Repository for the paper "Errare algorithmicum est - Exploring General-Purpose Autonomous Multimodal Agents for Pathology Report Generation"

    DeepMicroscopy/AgenticPathologyReports’s past year of commit activity
    0 0 0 0 Updated Oct 28, 2025
  • Exact Public

    An open source online platform for collaborative image labeling of almost everything

    DeepMicroscopy/Exact’s past year of commit activity
    JavaScript 62 MIT 20 15 0 Updated Oct 20, 2025
  • SWAN Public
    DeepMicroscopy/SWAN’s past year of commit activity
    Python 2 0 29 0 Updated Oct 15, 2025
  • MIDOG25_T1_reference_docker Public

    Reference algorithm for the MIDOG 2025 challenge, track 1 (Mitosis Detection)

    DeepMicroscopy/MIDOG25_T1_reference_docker’s past year of commit activity
    Python 0 1 0 0 Updated Aug 30, 2025
  • MIDOG25_T1_evaluation_docker Public

    Repository for the evaluation script of submissions on MIDOG'25 on grand-challenge.

    DeepMicroscopy/MIDOG25_T1_evaluation_docker’s past year of commit activity
    Python 0 0 0 0 Updated Aug 12, 2025
  • Annotation-free-VLM-specialization Public
    DeepMicroscopy/Annotation-free-VLM-specialization’s past year of commit activity
    Python 2 0 1 0 Updated Aug 11, 2025
  • MIDOG_reference_docker Public

    Reference implementation of domain-adversarial training on a RetinaNet (to use as template in the MIDOG challenge)

    DeepMicroscopy/MIDOG_reference_docker’s past year of commit activity
    Python 8 11 2 0 Updated Jul 30, 2025
  • MIDOG25_T2_reference_docker Public

    Reference algorithm for the MIDOG 2025 challenge, track 2 (Atypical Mitosis Classification)

    DeepMicroscopy/MIDOG25_T2_reference_docker’s past year of commit activity
    Python 0 1 0 0 Updated Jul 30, 2025
  • SlideRunner Public

    SlideRunner is a tool for massive cell annotations in whole slide images

    DeepMicroscopy/SlideRunner’s past year of commit activity
    Python 79 GPL-3.0 10 4 2 Updated Jul 29, 2025
  • MIDOG_evaluation_docker Public

    Evaluation container for the MIDOG 2021 challenge on grand-challenge.org

    DeepMicroscopy/MIDOG_evaluation_docker’s past year of commit activity
    Python 0 1 0 0 Updated Jul 29, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…