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fix(dataset): fix for splitted files #650

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fix(dataset): fix for splitted files #650

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6 changes: 4 additions & 2 deletions deeprank2/dataset.py
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Original file line number Diff line number Diff line change
Expand Up @@ -316,6 +316,8 @@ def hdf5_to_pandas( # noqa: C901
else:
entry_names = [entry for entry, _ in f.items()]

if not entry_names:
continue
df_dict = {}
df_dict["id"] = entry_names

Expand Down Expand Up @@ -344,8 +346,8 @@ def hdf5_to_pandas( # noqa: C901
df_dict[feat] = [transform(row) for row in df_dict[feat]]

df_temp = pd.DataFrame(data=df_dict)
df_concat = pd.concat([df_final, df_temp])
self.df = df_concat.reset_index(drop=True)
df_final = pd.concat([df_final, df_temp])
self.df = df_final.reset_index(drop=True)
return self.df

def save_hist( # noqa: C901
Expand Down