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kordejong committed Jan 17, 2025
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2 changes: 0 additions & 2 deletions README.md
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- [Developer manual](documentation/develop/index.rst)
- [User manual](documentation/use/index.rst)

<img src="documentation/use/generator.png"/>
2 changes: 1 addition & 1 deletion documentation/develop/environment.rst
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# Note: commit .pre-commit-config.yaml if any hooks actually got updated
pre-commit autoupdate
source/script/ap_pathway_generator.py --help
source/script/ap_plot_pathway_map.py --help
The project contains code for generating :ref:`targets <sec-cmake>`, like documentation and the
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2 changes: 0 additions & 2 deletions documentation/use/CMakeLists.txt
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foreach(name IN ITEMS
generator.png
generator.rst
get_started.rst
import_export.rst
index.rst
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8 changes: 1 addition & 7 deletions documentation/use/get_started.rst
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===========

Here, we assume that you want to get started using the ``adaptation_pathways`` Python package
distributed as a so-called Python Wheel. There are other ways the package can be distributed,
for example as a portable application, containing the Pathway Generator GUI application and all
its dependencies. Installing that package is simply a matter of unzipping the file. The advantage
is the simplicity to get the Pathway Generator application up and running, but to be able to
use all functionality from the ``adaptation_pathways`` package, the Wheel should be installed
as described on the rest of this page.
distributed as a so-called Python Wheel.

The ``adaptation_pathways`` Python package can be used by performing these steps in turn:

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# Use an installed script
ap_plot_pathway_map --help
ap_pathway_generator --help
# Use the package
python3 -c "import adaptation_pathways as ap; print(ap.__version__)"
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4 changes: 0 additions & 4 deletions documentation/use/index.rst
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Get started <get_started>
Import / export <import_export>
Plotting pathways <plot>
Pathway generator <generator>


.. image:: generator.png

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