chore: add support for Python 3.13 (#712)

* add python 3.13 to ci.yml

* allow lxml 5

* add minimal pandas version for py3.13

* updated numpy dependency and lockfile

* updated poetry lockfile

* updated workflow files and sonar properties to python 3.13

.github/workflows/ci.yml

@@ -7,7 +7,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.9", "3.11", "3.12"]
+        python-version: ["3.9", "3.11", "3.12", "3.13"]
         os: [ubuntu-latest, windows-latest, macos-13]
     runs-on: ${{ matrix.os }}
     steps:
@@ -23,7 +23,7 @@ jobs:
       - name: Run image
         uses: abatilo/actions-poetry@v2.3.0
         with:
-          poetry-version: 1.8.3
+          poetry-version: 1.8.4
       - name: Cache Poetry virtualenv
         uses: actions/cache@v4
         id: cache
@@ -49,7 +49,7 @@ jobs:
         run: poetry run pytest --cov . --cov-report xml:coverage-reports/coverage-hydrolib-core.xml --junitxml=xunit-reports/xunit-result-hydrolib-core.xml
 
       - name: Autoformat code if the check fails
-        if: ${{ (matrix.os == 'ubuntu-latest') && (matrix.python-version == 3.12) }}
+        if: ${{ (matrix.os == 'ubuntu-latest') && (matrix.python-version == 3.13) }}
         run: |
           poetry run isort .
           poetry run black .

.github/workflows/docs.yml

@@ -12,12 +12,12 @@ jobs:
           fetch-depth: 0
       - uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Run image
         uses: abatilo/actions-poetry@v2.3.0
         with:
-          poetry-version: 1.8.3
+          poetry-version: 1.8.4
       - name: Cache Poetry virtualenv
         uses: actions/cache@v4
         id: cache

.github/workflows/docs_release.yml

@@ -13,12 +13,12 @@ jobs:
           fetch-depth: 0
       - uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Run image
         uses: abatilo/actions-poetry@v2.3.0
         with:
-          poetry-version: 1.8.3
+          poetry-version: 1.8.4
       - name: Cache Poetry virtualenv
         uses: actions/cache@v4
         id: cache

.github/workflows/integration.yml

@@ -13,7 +13,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [3.12]
+        python-version: [3.13]
         os: [ubuntu-latest]
     runs-on: ${{ matrix.os }}
     steps:
@@ -29,7 +29,7 @@ jobs:
       - name: Run image
         uses: abatilo/actions-poetry@v2.3.0
         with:
-          poetry-version: 1.8.3
+          poetry-version: 1.8.4
 
       - name: Cache Poetry virtualenv
         uses: actions/cache@v4

.github/workflows/release.yml

@@ -36,12 +36,12 @@ jobs:
       - name: Set up python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Run image
         uses: abatilo/actions-poetry@v2.3.0
         with:
-          poetry-version: 1.8.3
+          poetry-version: 1.8.4
 
       - name: Cache Poetry virtualenv
         uses: actions/cache@v4

pyproject.toml

@@ -18,7 +18,10 @@ python = "^3.9"
 # exclude yanked netcdf versions 1.7.0 and 1.7.1, but include 1.7.2 (first with python 3.12 support)
 netCDF4 = "^1.5,!=1.7.0,!=1.7.1"
 # no caret here, since numpy v2 is required for future python 3.13 support, but this is not yet widely supported by packages numpy v1 support is also still required.
-numpy = ">=1.25,<3"
+numpy = [
+    { version = ">=1.25,<3", python = "^3.9" },
+    { version = "^2.1", python = "^3.13" }
+]
 pydantic = "^2.5"
 # lxml 5.0 is from December 2023
 lxml = "^5.0"

sonar-project.properties

@@ -11,4 +11,4 @@ sonar.organization=deltares
 # Encoding of the source code. Default is default system encoding
 sonar.sourceEncoding=UTF-8
 
-sonar.python.version=3.9, 3.10, 3.11, 3.12
+sonar.python.version=3.9, 3.10, 3.11, 3.12, 3.13