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Merge pull request #121 from Burke-Lauenroth-Lab/expose_calc_of_evapc…
…oeff Expose and fix calculation of evapcoeff as funtion - pull request/commit passes all CI builds by travis and appveyor - pull request passes all test projects (except 6 which is currently not set up) > elapsed_s has_run has_problems made_new_refs deleted_output > Test1 1191.355 TRUE TRUE FALSE FALSE > Test2 942.577 TRUE FALSE FALSE FALSE > Test3 174.627 TRUE FALSE FALSE FALSE > Test4 42.126 TRUE FALSE FALSE FALSE > Test5 46.085 TRUE FALSE FALSE FALSE > Test6 0.000 FALSE TRUE FALSE FALSE > Test7 305.494 TRUE FALSE FALSE FALSE > Test8 248.107 TRUE FALSE FALSE FALSE > referenceDB > Test1 dbTables_Test1_downscaling_overhaul_v2.1.1.sqlite3 > Test2 dbTables_Test2_LookupWeatherFolders_v2.1.1.sqlite3 > Test3 dbTables_Test3_OnlyMeanDailyOutput_v2.1.1.sqlite3 > Test4 dbTables_Test4_AllOverallAggregations_snow_v2.1.1.sqlite3 > Test5 dbTables_Test5_AllOverallAggregations_mpi_v2.1.1.sqlite3 > Test6 > Test7 dbTables_Test7_livneh_extraction_v2.1.1.sqlite3 > Test8 dbTables_Test8_ExperimentalDesign_v2.1.1.sqlite3 - pull request passes all unit tests when run locally with devtools::test() > Testing rSFSW2 > dbOutput: action: check: ............. > dbWork: runIDs organization: > Delta-hybrid (mod3) downscaling: add_delta_to_PPT: .............. > Delta-hybrid (mod3) downscaling: applyPPTdelta_simple and applyPPTdelta_detailed: ......................... > Delta-hybrid (mod3) downscaling: fix_PPTdata_length: ........... > GISSM: germination_wait_times: ............. > GISSM: get_KilledBySoilLayers: ................... > GISSM: setFALSE_SeedlingSurvival_1stSeason: ......... > Indices: ......................................................................................................... > Input/Output of rSFSW2 datafiles: ........... > lints: S > Match for appending data: .... > Pedotransfer functions: SWP <-> VWC: ................................................................................................................................................... > Soil functions: .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. > Manipulate soil layers: ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. > > Skipped ------------------------------------------------- > 1. Package Style (@test_lint.R#4) - rSFSW2 is not ready for 'lint' testing... > > DONE ====================================================
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# R for travis: see documentation at https://docs.travis-ci.com/user/languages/r | ||
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language: R | ||
env: | ||
- _R_CHECK_FORCE_SUGGESTS_=false # because of Rmpi, ncdf4, hydromat, and weathergen | ||
sudo: false | ||
cache: packages | ||
warnings_are_errors: false # this is only needed for rSOILWAT2 | ||
cache: | ||
- packages | ||
warnings_are_errors: false # turn this back on for more severe testing | ||
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before_install: | ||
# install dependencies of rSOILWAT2 (because rSOILWAT2 is installed 'before install' and | ||
# thus dependencies are not installed and r_packages has not taken effect yet) | ||
- Rscript -e 'utils::install.packages(c("blob", "DBI", "RSQLite"))' | ||
# obtain source code of rSOILWAT2 from github | ||
- git clone -b master --single-branch --recursive https://github.com/Burke-Lauenroth-Lab/rSOILWAT2.git /tmp/rSOILWAT2 | ||
- cd /tmp/rSOILWAT2 | ||
- ./tools/TarAndInstall_31n.sh | ||
# install rSOILWAT2 | ||
- R CMD INSTALL /tmp/rSOILWAT2 | ||
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after_success: | ||
- Rscript -e 'covr::codecov()' |
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