Update ekat submodule #2827

bartgol · 2024-05-16T02:55:56Z

Update the ekat submodule to the commit just before the one that updates to kokkos 4.2. This takes care of some pervasive changes related to ekat's Units, so that we don't need those changes when we do the upstream merge.

The main change is that Units no longer offers set_string. The good news is that any arithmetic expression, such as kg/kg will correspond verbatim to the stored string (possibly with parentheses, for legibility). If one still wants a peculiar string (suche as "m2" for squared meters), they can pass it at consturction time, like Units m2 (m*m,"m2");. That string will then be used in downstream expressions, so that auto Wm2 = W/m2; will automatically display as "W/m2".

This takes away the need of the almost ubiquitous snippet

auto Q = kg/kg;
Q.set_string("kg/kg");

and we can simply just use kg/kg directly.

Note: we can still get a string in the fundamental SI units:

auto Wm2 = W/m2;
std::cout << Wm2.to_string() << "\n"; // prints "W/m2"
std::cout << Wm2.get_si_string() << "\n"; // prints something like kg^a m^b s^c

E3SM-Bot · 2024-05-16T13:13:05Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5429
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5707
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

Using Repos:

Repo: SCREAM (E3SM-Project/scream)

Pull Request Author: bartgol

E3SM-Bot · 2024-05-16T14:34:16Z

NOTICE: The AutoTester has encountered an internal error (usually a Communications Timeout), testing will be restarted, previous tests may still be running but will be ignored by the AutoTester...

E3SM-Bot · 2024-05-16T14:35:39Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5431
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5709
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

Using Repos:

Repo: SCREAM (E3SM-Project/scream)

Pull Request Author: bartgol

E3SM-Bot · 2024-05-16T15:13:08Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5431
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5709
Status: FAILED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

SCREAM_PullRequest_Autotester_Mappy # 5431 PASSED (click to see last 100 lines of console output)


Starting SETUP for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 procs
Finished XML for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 0.332861 seconds (PASS)
Starting SETUP for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 1 procs
Finished CREATE_NEWCASE for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 6.592829 seconds (PASS)
Starting XML for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 procs
Finished SETUP for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 2.522677 seconds (PASS)
Finished XML for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 0.349051 seconds (PASS)
Starting SHAREDLIB_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 with 1 procs
Starting SETUP for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 procs
Finished SETUP for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 2.531744 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 1 procs
Finished SETUP for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 2.107289 seconds (PASS)
Finished SETUP for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 2.551565 seconds (PASS)
Finished SETUP for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 2.597574 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 procs
Starting SHAREDLIB_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 1 procs
Starting SHAREDLIB_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 procs
Finished SETUP for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 2.603876 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 procs
Finished SHAREDLIB_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 55.654989 seconds (PASS)
Starting MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics with 16 procs
Finished SHAREDLIB_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 55.333256 seconds (PASS)
Starting MODEL_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 with 16 procs
Finished SHAREDLIB_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 55.343798 seconds (PASS)
Starting MODEL_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 16 procs
Finished SHAREDLIB_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 70.892916 seconds (PASS)
Starting MODEL_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu with 16 procs
Finished SHAREDLIB_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 69.635737 seconds (PASS)
Finished SHAREDLIB_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 80.902165 seconds (PASS)
Finished SHAREDLIB_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 170.164242 seconds (PASS)
Finished SHAREDLIB_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 195.877570 seconds (PASS)
Starting MODEL_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 16 procs
Finished MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 175.938666 seconds (PASS)
Starting RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics with 1 proc on interactive node and 64 procs on compute nodes
Finished MODEL_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 175.321774 seconds (PASS)
Starting RUN for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 1.366756 seconds (PEND). [COMPLETED 1 of 8]
Starting MODEL_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 16 procs
Finished RUN for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 0.940034 seconds (PEND). [COMPLETED 2 of 8]
Starting MODEL_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 16 procs
Finished MODEL_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 176.070869 seconds (PASS)
Starting RUN for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 0.957023 seconds (PEND). [COMPLETED 3 of 8]
Starting MODEL_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 16 procs
Finished MODEL_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 323.045570 seconds (PASS)
Starting RUN for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu with 1 proc on interactive node and 16 procs on compute nodes
Finished RUN for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 7.367850 seconds (PEND). [COMPLETED 4 of 8]
Finished MODEL_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 328.833448 seconds (PASS)
Starting RUN for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 0.926753 seconds (PEND). [COMPLETED 5 of 8]
Finished MODEL_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 363.564873 seconds (PASS)
Starting RUN for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 0.995118 seconds (PEND). [COMPLETED 6 of 8]
Finished MODEL_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 449.359468 seconds (PASS)
Starting RUN for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 0.902774 seconds (PEND). [COMPLETED 7 of 8]
Finished MODEL_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 535.367883 seconds (PASS)
Starting RUN for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 1.108949 seconds (PEND). [COMPLETED 8 of 8]
Waiting for tests to finish
PASS ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1.C.20240516_085011_ouybim
PASS ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4.C.20240516_085011_ouybim
PASS ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5.C.20240516_085011_ouybim
PASS ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2.C.20240516_085011_ouybim
PASS ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu.C.20240516_085011_ouybim
PASS PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1.C.20240516_085011_ouybim
PASS SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics.C.20240516_085011_ouybim
PASS SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3.C.20240516_085011_ouybim
test-scheduler took 808.2320356369019 seconds'
+ [[ 0 != 0 ]]
+ set +x
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 51672 killed;
[ssh-agent] Stopped.
Performing Post build task...
Match found for : : True
Logical operation result is TRUE
Running script  : #!/bin/bash -le
cd $WORKSPACE/${BUILD_ID}/
./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh
We're having issues with some test-launcher job hanging forever. So let's make sure we clean all penting test-launcher jobs
squeue -o"%.7i %u %40j" | grep e3sm-jenkins | grep test-launcher | awk '{ print $1 }' | xargs -r scancel
[SCREAM_PullRequest_Autotester_Mappy] $ /bin/bash -le /tmp/jenkins13346203552045154807.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Finished: SUCCESS

SCREAM_PullRequest_Autotester_Weaver # 5709 FAILED (click to see last 100 lines of console output)


The following tests FAILED:

38 - rrtmgp_tests (Failed)

95 - rrtmgp_standalone_unit (Failed)

CMake Error at /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/cmake/ctest_script.cmake:76 (message):

Test had fails
===============================================================================

Testing '''93485ac06f3c684d4c6fae9d145453fd9eede6cc''' for test '''full_sp_debug'''
RUN: taskset -c 52-103 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/full_sp_debug/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/full_sp_debug -DBUILD_NAME_MOD=full_sp_debug -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.0/gcc/11.3.0/openmpi/4.1.4/5ka6asw -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.0/gcc/11.3.0/openmpi/4.1.4/mdd6fth -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.4/52dibdr -DCMAKE_BUILD_TYPE=Debug -DEKAT_DEFAULT_BFB=True -DSCREAM_DOUBLE_PRECISION=False -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/full_sp_debug" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/full_sp_debug
Testing '''93485ac06f3c684d4c6fae9d145453fd9eede6cc''' for test '''release'''
RUN: taskset -c 104-155 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/release/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/release -DBUILD_NAME_MOD=release -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.0/gcc/11.3.0/openmpi/4.1.4/5ka6asw -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.0/gcc/11.3.0/openmpi/4.1.4/mdd6fth -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.4/52dibdr -DCMAKE_BUILD_TYPE=Release -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/release" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/release
Testing '''93485ac06f3c684d4c6fae9d145453fd9eede6cc''' for test '''full_debug'''
RUN: taskset -c 0-51 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/full_debug/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/full_debug -DBUILD_NAME_MOD=full_debug -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.0/gcc/11.3.0/openmpi/4.1.4/5ka6asw -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.0/gcc/11.3.0/openmpi/4.1.4/mdd6fth -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.4/52dibdr -DCMAKE_BUILD_TYPE=Debug -DEKAT_DEFAULT_BFB=True -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/full_debug" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx/ctest-build/full_debug

Build type full_debug failed at testing time. Here'''s a list of failed tests:

38:rrtmgp_tests

95:rrtmgp_standalone_unit
Build type release failed at testing time. Here'''s a list of failed tests:

38:rrtmgp_tests

95:rrtmgp_standalone_unit
Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx

weaver failed'

errors='Build type full_debug failed at testing time. Here'''s a list of failed tests:

38:rrtmgp_tests

95:rrtmgp_standalone_unit

Build type release failed at testing time. Here'''s a list of failed tests:

38:rrtmgp_tests

95:rrtmgp_standalone_unit
Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx

weaver failed'

SA_FAILURES_DETAILS+='Build type full_debug failed at testing time. Here'''s a list of failed tests:

38:rrtmgp_tests

95:rrtmgp_standalone_unit

Build type release failed at testing time. Here'''s a list of failed tests:

38:rrtmgp_tests

95:rrtmgp_standalone_unit
Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx

weaver failed'

[[ 1 == 0 ]]
[[ weaver == \m\a\p\p\y ]]
set +x

######################################################

FAILS DETECTED:

SCREAM STANDALONE TESTING FAILED!

Build type full_debug failed at testing time. Here's a list of failed tests:

38:rrtmgp_tests

95:rrtmgp_standalone_unit

Build type release failed at testing time. Here's a list of failed tests:

38:rrtmgp_tests

95:rrtmgp_standalone_unit
Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5709/scream/components/eamxx

weaver failed

######################################################

Build step 'Execute shell' marked build as failure

Performing Post build task...

Match found for : : True

Logical operation result is TRUE

Running script  : #!/bin/bash -le
cd $WORKSPACE/${BUILD_ID}/
./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh

[SCREAM_PullRequest_Autotester_Weaver] $ /bin/bash -le /tmp/jenkins6329868953843915170.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Sending e-mails to: lbertag@sandia.gov

Finished: FAILURE

bartgol · 2024-05-16T15:36:45Z

The failures are due to the HDF error on weaver. Those tests should not be impacted by this PR anyways, so I'm leaning toward merging. I will go ahead and fix the files on weaver anyways.

E3SM-Bot · 2024-05-20T18:11:54Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

E3SM-Bot · 2024-05-20T18:14:22Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5447
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5725
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

Using Repos:

Repo: SCREAM (E3SM-Project/scream)

Pull Request Author: bartgol

E3SM-Bot · 2024-05-20T18:53:02Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5447
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5725
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;EKAT
PULLREQUESTNUM	2827
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`6c26603`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`3a41dd4`
TEST_REPO_ALIAS	SCREAM

bartgol added 2 commits May 15, 2024 20:31

Update ekat submodule

2f58938

EAMxx: fix usage of ekat's Units

1f470ad

bartgol added AT: AUTOMERGE EKAT labels May 16, 2024

bartgol self-assigned this May 16, 2024

EAMxx: fix compiler warning

6c26603

bartgol force-pushed the bartgol/ekat-update branch from c73350d to 6c26603 Compare May 16, 2024 02:59

bartgol requested review from AaronDonahue and tcclevenger May 16, 2024 15:36

tcclevenger approved these changes May 16, 2024

View reviewed changes

bartgol added the AT: RETEST label May 20, 2024

bartgol mentioned this pull request May 20, 2024

Upstream merge 2024-05-20 #2835

Merged

E3SM-Bot removed the AT: RETEST label May 20, 2024

E3SM-Bot merged commit da61854 into master May 20, 2024
8 checks passed

E3SM-Bot deleted the bartgol/ekat-update branch May 20, 2024 18:53

E3SM-Bot removed the AT: AUTOMERGE label May 20, 2024

Update ekat submodule #2827

Update ekat submodule #2827

Conversation

bartgol commented May 16, 2024 • edited Loading

E3SM-Bot commented May 16, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

Using Repos:

E3SM-Bot commented May 16, 2024

E3SM-Bot commented May 16, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

Using Repos:

E3SM-Bot commented May 16, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

We're having issues with some test-launcher job hanging forever. So let's make sure we clean all penting test-launcher jobs

=============================================================================== Testing '''93485ac06f3c684d4c6fae9d145453fd9eede6cc''' for test '''full_sp_debug'''

Testing '''93485ac06f3c684d4c6fae9d145453fd9eede6cc''' for test '''release'''

Testing '''93485ac06f3c684d4c6fae9d145453fd9eede6cc''' for test '''full_debug'''

bartgol commented May 16, 2024

E3SM-Bot commented May 20, 2024

E3SM-Bot commented May 20, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

Using Repos:

E3SM-Bot commented May 20, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

bartgol commented May 16, 2024 •

edited

Loading

===============================================================================
Testing '''93485ac06f3c684d4c6fae9d145453fd9eede6cc''' for test '''full_sp_debug'''