v2.4.44 #348
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v2.4.44 #348
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This PR:
* adds management commands to dump XML dumps of Studies ("projects") and Analyses ("runs") for EBI Search indexing.
* updates the schema of the dumps. In particular, we no longer separately index samples; instead the relevant sample metadata is dumped onto the analyses listing. A sample may appear twice, if there are multiple analyses of it, but this is acceptable.
* updates a few mongo queries, by introducing lazy references. By default these do not fetch the other side of references fields (e.g. the description of an interpro identifier found in an analysis). Instead, they just return the PK.
* Since the PKs for these fields are usually all we need to xref annotations to the foreign db (e.g., interpro), and are adequate for a user to search for (e.g., by searching an IPRxxxx accession), this is a fine optimisation to make the search dump run in reasonable time.
* makes (at least some) last_updated fields be auto-nows. This is so that if the object changes, it'll be included in the next incremental EBI Search indexing.
Co-authored-by: Martin Beracochea <mbc@ebi.ac.uk>
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