ENA API handler

This repository contains an ENA API client, mainly used by the EMBL-EBI MGnify team for the internal automation system.

Installation

pip install -U git+git://github.com/EBI-Metagenomics/ena-api-handler.git

Development

Create python virtual env or a conda env.

Install the dev dependencies:

pip install -r requirements-dev.txt

If you haven't configured the pre-commit hooks, please do so:

pre-commit-hooks install

Setting up analysis_request_cli

The following environment vars must be defined:

• ENA_API_USER: The username for the the ENA search Portal
• ENA_API_PASSWORD: The password for the ENA search Portal