new release

.gitignore

@@ -1,5 +1,20 @@
+*.tmp
+reports
+src/ontology/oort
+src/ontology/reports
+src/ontology/imports
+src/ontology/mirror/*
+src/ontology/cmpo.obo
+src/ontology/cmpo.owl
+src/ontology/cmpo-simple.owl
+semantic.cache
 .DS_Store
+*~
 oldfiles*
 Dropbox - Shortcut.lnk
 patterns.docx
-imports/*
+.dropbox
+cmpo-composer
+paper-stats.xlsx
+webulous_submissions
+zooma

README.md

@@ -1,3 +1,5 @@
+[![DOI](https://zenodo.org/badge/13996/obophenotype/cmpo.svg)](https://zenodo.org/badge/latestdoi/13996/obophenotype/cmpo)
+
 CMPO
 ====
 
@@ -22,11 +24,20 @@ Apache License, version 2.0.
 
 ### GitHub Files ###
 
-* __release/cmpo.obo__ 
+* __cmpo.obo__ 
  * A simple OBO formatted released of CMPO
-* __release/cmpo-simple.owl__ 
+* __cmpo-simple.owl__ 
  * A simple OWL formatted version of CMPO, pre-reasoned and exludes logical axioms. 
-* __release/cmpo.owl__ 
+* __cmpo.owl__ 
  * An OWL formatted version of CMPO, pre-reasoned and includes logial axioms. (GO/PATO terms imported using MIREOT)
-* __src/cmpo.owl__ 
+* __src/ontology/cmpo-edit.owl__ 
  * This is the source file for CMPO editors. It includes all logical axioms and imports the Gene Ontology and PATO. (NOTE: If you unpack the imports.tar.gz file and open cmpo.owl in Protege, the Protege will import GO and PATO from your file system rather than pulling form the web)
+
+### Previous releases
+
+Previous releases are available from this repository, see the [releases](releases tab).
+Editors of this ontology should use the edit version, [src/ontology/cmpo-edit.owl](src/ontology/cmpo-edit.owl)
+
+## Acknowledgements
+
+This ontology repository was created using the [ontology starter kit](https://github.com/INCATools/ontology-starter-kit)

cmpo-simple.owl

@@ -13,7 +13,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:obo="http://purl.obolibrary.org/obo/">
     <owl:Ontology rdf:about="http://www.ebi.ac.uk/cmpo/cmpo-simple.owl">
-        <owl:versionIRI rdf:resource="http://www.ebi.ac.uk/cmpo/releases/2017-12-18/cmpo-simple.owl"/>
+        <owl:versionIRI rdf:resource="http://www.ebi.ac.uk/cmpo/releases/2017-12-19/cmpo-simple.owl"/>
     </owl:Ontology>
 
 

cmpo.obo

@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: http://www.ebi.ac.uk/cmpo/releases/2017-12-18/cmpo.obo
+data-version: http://www.ebi.ac.uk/cmpo/releases/2017-12-19/cmpo.obo
 subsetdef: cmpo "CMPO subset"
 subsetdef: goantislim_grouping "Grouping classes that can be excluded"
 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"

cmpo.owl

@@ -14,7 +14,7 @@
      xmlns:obo="http://purl.obolibrary.org/obo/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://www.ebi.ac.uk/cmpo/cmpo.owl">
-        <owl:versionIRI rdf:resource="http://www.ebi.ac.uk/cmpo/releases/2017-12-18/cmpo.owl"/>
+        <owl:versionIRI rdf:resource="http://www.ebi.ac.uk/cmpo/releases/2017-12-19/cmpo.owl"/>
         <dc:contributor>Simon Jupp</dc:contributor>
         <dc:contributor>Johan Lundin</dc:contributor>
         <dc:contributor>Claudia Lukas</dc:contributor>