Skip to content

Commit

Permalink
Merge branch 'gh_actions' into 'master'
Browse files Browse the repository at this point in the history
Add gh workflow for running the wdl

See merge request mass-spectrometry/metams!2
  • Loading branch information
kheal committed Jul 25, 2024
2 parents dc62c93 + 2a96280 commit ac2cd43
Showing 1 changed file with 28 additions and 0 deletions.
28 changes: 28 additions & 0 deletions .github/workflows/wdl_checker.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
name: MiniWDL linter CI

on:
push:
workflow_dispatch:

jobs:
run-miniwdl:
runs-on: ubuntu-latest

steps:
- name: Checkout repository
uses: actions/checkout@v2

- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.8' # specify the Python version you need

- name: Install MiniWDL
run: |
python -m pip install --upgrade pip
pip install miniwdl
- name: Run MiniWDL
run: |
# Add the commands to run your MiniWDL workflow
miniwdl run wdl/metaMS.wdl -i wdl/metams_input.json --verbose --no-cache --copy-input-files

0 comments on commit ac2cd43

Please sign in to comment.