CS231n Project

Dependencies

sudo apt-get install -y graphviz libgraphviz-dev

TODO:

• 3D net (Jamil)

• data augmentation (rotation) (Evan, Stephanie)

• slices from different planes (Stephanie)

• Multi-View Fusion (predict on all three axis and average softmax outputs)

• CRF (Jamil for CRF, Evan for training loop)

• Additional public data (Jamil)

• Use subset of channels to reduce overfitting (read short papers)

• dilated convolutions

• Architecture search, Per channels convolutions

CRF https://github.com/lucasb-eyer/pydensecrf/tree/94d1cddab277e6e93812dfe7daca7d4693560758

Existing work by Sergi Valverde: https://github.com/sergivalverde/cnn-ms-lesion-segmentation

UMich ATLAS dataset: https://www.icpsr.umich.edu/icpsrweb/ADDEP/studies/36684/version/1

USC dataset: http://fcon_1000.projects.nitrc.org/indi/retro/atlas_download.html

MS MRI Lesion Generation: http://brainweb.bic.mni.mcgill.ca/brainweb/selection_ms.html

MCCAI 2008 Dataset: https://www.nitrc.org/frs/?group_id=745